View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18941_high_12 (Length: 236)
Name: NF18941_high_12
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 783303 - 783081
Alignment:
| Q |
1 |
atcttgtacttagaccttaatctatttcctaaagccaaacactgttctttccttgctaacttaagaaggttaggaccttctctcattatggctgcaccac |
100 |
Q |
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| T |
783303 |
atcttgtacttagaccttaatctatttcctaaagccaaacactgttctttccttgctaacttaagaaggttaggaccttctctcattatggctgcaccac |
783204 |
T |
|
| Q |
101 |
cagttggcatctcaaagatttgttccttaggtgactcccatgtgatcacatagaattcttcaacttgtgccttacgtaacaatccaccagtgcttcctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
783203 |
cagttggcatctcaaagatttgttccttaggtgactcccatgtgatcacatagaattcttcaacttgtgccttacgtaacaatccaccagtgcttcctcc |
783104 |
T |
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| Q |
201 |
aaagattggtgaaggtgtgtttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
783103 |
aaagattggtgaaggtgtgtttg |
783081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 47123911 - 47124089
Alignment:
| Q |
1 |
atcttgtacttagaccttaatctatttcctaaagccaaacactgttctttccttgctaacttaagaaggttaggaccttctctcattatggctgcaccac |
100 |
Q |
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||||||||||| ||||| || ||| |||| | ||||||||| ||||||||||||||||| || ||||| || |||||||| ||||| ||||||||||||| |
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| T |
47123911 |
atcttgtactttgacctcaacctagttccaagagccaaacattgttctttccttgctaatttgagaagattgggaccttccctcatgatggctgcaccac |
47124010 |
T |
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| Q |
101 |
cagttggcatctcaaagatttgttccttaggtgactcccatgtgatcacatagaattcttcaacttgtgccttacgtaa |
179 |
Q |
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|| ||| || ||||| |||||||| || ||||| |||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
47124011 |
catttgctatttcaaaaatttgttcttttggtgaatcccatgtgatcacatgaaattcttcaacttgggccttgcgtaa |
47124089 |
T |
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