View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18941_high_3 (Length: 534)
Name: NF18941_high_3
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Original strand, 44828535 - 44829036
Alignment:
| Q |
20 |
aaagaaacttatatttgtaatacatattagaattaacaatcatcaaagctatattaatcttgtaaattactctacgttacctgaatttctgaactggtac |
119 |
Q |
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| T |
44828535 |
aaagaaacttatttttgtaatacatattagaattaacaatcatcaaagctatattaatcttgtaaattactctacattacctgaatttctgaactggtac |
44828634 |
T |
|
| Q |
120 |
ctccgatgacatccttaacaatactcaacacttcctcagttaaaccatgttcatcaaataccgtcctaatatattaaatagtcacaagataatatgttta |
219 |
Q |
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| T |
44828635 |
ctccgatgacatccttaacaatactcaacacttcctcagttaaaccatgttcatcaaataccgtcctaatatattaaatagtcacaagataatatgttta |
44828734 |
T |
|
| Q |
220 |
gttaaggagaaacttaaattattttaatgaagtagataaaatgatgcacaataagtagaannnnnnnggaggtccagcaaaacatgtattacatatgaat |
319 |
Q |
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| T |
44828735 |
gttaaggagaaacttaaattattttaatgaagtagataaaatgatgcacaataagtagaatttttttggaggtccagcaaaacatgtattacatatcaat |
44828834 |
T |
|
| Q |
320 |
taaatttgaaatttaagaaatttacatctttaactctactgataaattaaatagaacttctaaatgtaagtataataacatgtacattttgatttaccta |
419 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828835 |
taaatttgaaatttaag-aatttacatctttaattctactgataaattaaatagaacttctaaatgtaagtataataacatgtacattttgatttaccta |
44828933 |
T |
|
| Q |
420 |
ataaatcggtcttcaccctgagaaaatttacgttcaacttccttgtcctcgtttgactcttcatcactatcactgcatactaatgtttcaccttcctgat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828934 |
ataaatcggtcttcaccctgagaaaatttacgttcaacttccttgtcctcgtttgactcttcatcactatcactgcatactaatgtttcaccttcctgat |
44829033 |
T |
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| Q |
520 |
gat |
522 |
Q |
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| T |
44829034 |
gat |
44829036 |
T |
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