View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18941_high_6 (Length: 315)
Name: NF18941_high_6
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_high_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 44829327 - 44829013
Alignment:
| Q |
1 |
aactatcaggatgccaagcatcaacaggttacctccatatacgtcttggatacatttagccaggtgtgtttgacttataaatttcaatgacatgttgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44829327 |
aactatcaggatgccaagcatcaacaggttacctccatatacgtcttggatacatttagccaggtgtgtttgaattataaatttcaatgacatgttgtga |
44829228 |
T |
|
| Q |
101 |
atcctattacatgaaaatttttaggaagtgaaagtgtatgtttaatatgcatttgatgtcaaatgttattgatcaatctatgttaaatttgtgtcgtcta |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829227 |
atcctcttacatgaaaatttttaggaagtgaaagtgtatgtttaatatgcatttgatgtcaaatgttattgatcaatctatgttaaatttgtgtcgtcta |
44829128 |
T |
|
| Q |
201 |
tttactactttttgaaaacatttcttgcaaaatagaaatgaaaaaatgactgcagatcaggcagtttctagaaaaagaaatgtatattataatcatcagg |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829127 |
tttactactttctgaaaacatttcttgcaaaatagaaatgaaaaaatgactgcagatcaggcagtttctagaaaaagaaatgtatattataatcatcagg |
44829028 |
T |
|
| Q |
301 |
aaggtgaaacattag |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44829027 |
aaggtgaaacattag |
44829013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University