View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18941_low_1 (Length: 1008)

Name: NF18941_low_1
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18941_low_1
NF18941_low_1
[»] chr4 (16 HSPs)
chr4 (17-1004)||(4121397-4122398)
chr4 (104-253)||(4119067-4119217)
chr4 (582-666)||(18151792-18151876)
chr4 (669-760)||(4347133-4347224)
chr4 (35-144)||(4131920-4132029)
chr4 (669-769)||(4118662-4118762)
chr4 (669-760)||(4363559-4363650)
chr4 (677-732)||(4131534-4131589)
chr4 (414-518)||(4118839-4118943)
chr4 (417-497)||(4363438-4363518)
chr4 (532-582)||(4337985-4338035)
chr4 (922-1004)||(4131274-4131359)
chr4 (318-379)||(4337668-4337729)
chr4 (531-583)||(4118763-4118815)
chr4 (539-579)||(4363514-4363554)
chr4 (350-409)||(4119009-4119071)
[»] chr3 (2 HSPs)
chr3 (582-666)||(28372514-28372598)
chr3 (582-666)||(28380336-28380420)


Alignment Details
Target: chr4 (Bit Score: 910; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 910; E-Value: 0
Query Start/End: Original strand, 17 - 1004
Target Start/End: Complemental strand, 4122398 - 4121397
Alignment:
Q  17 cgaacctaatgctttaggaagataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaa-cagaacttgcagatggaaatcag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4122398 cgaacctaatgctttaggaagataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaaacagaacttgcagatggaaatcag 4122299  T
Q  116 ccatgttttcaaagaaggcattcaaaatgaaaacaatcttgcaatcacagtatgtttcaagaagagtttatctatgtggctatgtgagtctaatacattt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122298 ccatgttttcaaagaaggcattcaaaatgaaaacaatcttgcaatcacagtatgtttcaagaagagtttatctatgtggctatgtgagtctaatacattt 4122199  T
Q  216 cttcagttcacgcaatcaggtttgcagtctgatctttattgttgttattcttattcaatgtgtgcctagggtttagtttttcatcggtcctcacaaaata 315  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122198 cttcaattcacgcaatcaggtttgcagtctgatctttattgttgttattcttattcaatgtgtgcctagggtttagtttttcatcggtcctcacaaaata 4122099  T
Q  316 tgtattttttggttatctaattttttaattactgctttaaaaatgttttaacattcaatttggataccagtactcataaaagaaaggcatttctaaaata 415  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122098 tgtattttttagttatctaattttttaattactgctttaaaaatgttttaacattcaatttggataccagtactcataaaagaaaggcatttctaaaata 4121999  T
Q  416 agcattttctcatttttactatgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatgtt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121998 agcattttctcatttttactatgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatgtt 4121899  T
Q  516 ataatatctaagaagtaagaatgaagaattattttgtttagcatgcatatttttcattggtgtgccaatattctcgaattcataagagatttctttgtct 615  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4121898 atactatctaagaagtaagaatgaagaattattttgtttagcatgcatatttttcattggtatgccaatattctcgaattcataagagatttctttgtct 4121799  T
Q  616 atgtatcataccatttgatcttttaggtcaagacatcacctcgacggttatttgatgcttgcattgagaattgtcattcttttcatttctatttttgatt 715  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4121798 atgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttatttgatgcttgcattgagaattgtcattcttttcatttctattttagatt 4121699  T
Q  716 tgtggaatttggttttgttggctaatgtaggggatttctctttctgggggtaagctctagaactgtttgagagtttgtacccttgatgttgagcacaaga 815  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4121698 tgtggattttggttttgttggctaatgtaggagatttctctttctgggggtaagctctagaactgtttgagagtttgtacccttgatgttgagcataaga 4121599  T
Q  816 gcatcctgccgactgcaaacaatatttcgttaaacttcttcccgactgcagctggactatattcgtcggccacaggtttttcctttcttgataataaatt 915  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4121598 gcatcctgccgactgcaaacaatatttcgttaaacttcttcccgactgcagctggactatattcgttggccacaggtttttcctttcttgataataaatt 4121499  T
Q  916 -------------tttaaaattttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccat 1002  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4121498 tttatattgaatttttaaaattttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaaacattgaagagaaagaatcattatccat 4121399  T
Q  1003 tg 1004  Q
    ||    
T  4121398 tg 4121397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 4119217 - 4119067
Alignment:
Q  104 gatggaaatcagccatgttttcaaagaaggcattcaaaatgaaaacaatcttg-caatcacagtatgtttcaagaagagtttatctatgtggctatgtga 202  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| ||||||||||||| |  |||||| ||||||||    
T  4119217 gatgggaatcaaccatgttttcagagaaggcattcgaaatgaagacaatattggcaatcacagtatgcttcaagaagagttcagatatgtgactatgtga 4119118  T
Q  203 gtctaatacatttcttcagttcacgcaatcaggtttgcagtctgatcttta 253  Q
     |||||||||||||||| |||| | || |||||||||||||||||||||||    
T  4119117 atctaatacatttcttctgttctcccagtcaggtttgcagtctgatcttta 4119067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 582 - 666
Target Start/End: Original strand, 18151792 - 18151876
Alignment:
Q  582 aatattctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat 666  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18151792 aatatcctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat 18151876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 669 - 760
Target Start/End: Original strand, 4347133 - 4347224
Alignment:
Q  669 gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttct 760  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||    
T  4347133 gatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttggttttgctggctagtgtaggagatttctctttct 4347224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 4132029 - 4131920
Alignment:
Q  35 aagataaggaaaccaggatacttgattattgatcaacaaaatgaaaagtagacttaaacagaacttgcagatggaaatcagccatgttttcaaagaaggc 134  Q
    |||||||||||||||||||||||||| |||||||||| |||| ||  ||| |||||||||||| ||||| |||||||||||||||||||| |  ||| ||    
T  4132029 aagataaggaaaccaggatacttgatgattgatcaactaaattaattgtatacttaaacagaatttgcaaatggaaatcagccatgttttaagtgaaagc 4131930  T
Q  135 attcaaaatg 144  Q
    ||||||||||    
T  4131929 attcaaaatg 4131920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 669 - 769
Target Start/End: Complemental strand, 4118762 - 4118662
Alignment:
Q  669 gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttctgggggtaa 768  Q
    |||||||||||| ||| |||||| ||||||| ||||||||||| |||| |||||||| ||||||||||  | |||||| |||||||||||||||| ||||    
T  4118762 gatgcttgcattaagatttgtcactcttttcctttctattttttatttatggaatttagttttgttgggcagtgtaggagatttctctttctgggtgtaa 4118663  T
Q  769 g 769  Q
    |    
T  4118662 g 4118662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 669 - 760
Target Start/End: Original strand, 4363559 - 4363650
Alignment:
Q  669 gatgcttgcattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttgttggctaatgtaggggatttctctttct 760  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||| |||  ||||||||||| |||||  |||||| |||||| ||||||    
T  4363559 gatgcttgcattgagaattgtcattcttttcctttctatttatgattggtgtgatttggttttgctggctggtgtaggagatttccctttct 4363650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 677 - 732
Target Start/End: Complemental strand, 4131589 - 4131534
Alignment:
Q  677 cattgagaattgtcattcttttcatttctatttttgatttgtggaatttggttttg 732  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  4131589 cattgagaattgtcattcttttcctttctatttttgattggtggaatttggttttg 4131534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 4118943 - 4118839
Alignment:
Q  414 taagcattttctcatttttactatgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaagaactgcagtatcatg 513  Q
    |||||||||||||||||| ||||| || |||| || |||||||||||| ||||   |||| ||||||||| || ||||| ||||||||||||||| |||     
T  4118943 taagcattttctcattttaactattagttcctgcagtgtaggagacatcagtaccacattaagtaaataagtggcaggatagaagaactgcagtaacata 4118844  T
Q  514 ttata 518  Q
    |||||    
T  4118843 ttata 4118839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 417 - 497
Target Start/End: Original strand, 4363438 - 4363518
Alignment:
Q  417 gcattttctcatttttactatgagctcctacaatgtaggagacatgagtattgcattgagtaaataaatgccaggaaagaa 497  Q
    |||||| |||||||| |||||||||||||   ||||||||||||  | ||||||||| |||||||||||| ||||||||||    
T  4363438 gcatttcctcattttaactatgagctcctttgatgtaggagacaacaatattgcattaagtaaataaatgtcaggaaagaa 4363518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 532 - 582
Target Start/End: Original strand, 4337985 - 4338035
Alignment:
Q  532 aagaatgaagaattattttgtttagcatgcatatttttcattggtgtgcca 582  Q
    |||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  4337985 aagaatgaagaattattttgtttaacatgcatattttttatcggtgtgcca 4338035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 1004
Target Start/End: Complemental strand, 4131359 - 4131274
Alignment:
Q  922 attttaactttgatcgttatctgcagtaaatttgtgtttttaaaacttgccaa---acattgaagagaaagaatcattatccattg 1004  Q
    |||| |||||| ||| || |||||||||||||||  |||||||||| ||| ||   |||||||||| |||||||||||||||||||    
T  4131359 atttgaactttcatcattttctgcagtaaatttgactttttaaaacctgctaataaacattgaagaaaaagaatcattatccattg 4131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 4337668 - 4337729
Alignment:
Q  318 tattttttggttatctaattttttaattactgctttaaaaatgttttaacattcaatttgga 379  Q
    |||| ||| ||||||||||| |||| ||| |||||||||| ||||| |||||||||||||||    
T  4337668 tattgtttagttatctaattgtttagttattgctttaaaactgtttaaacattcaatttgga 4337729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 531 - 583
Target Start/End: Complemental strand, 4118815 - 4118763
Alignment:
Q  531 taagaatgaagaattattttgtttagcatgcatatttttcattggtgtgccaa 583  Q
    |||||||||| | ||||||| |||||||||||||||||| |||| ||||||||    
T  4118815 taagaatgaaaagttattttatttagcatgcatattttttattgatgtgccaa 4118763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 539 - 579
Target Start/End: Original strand, 4363514 - 4363554
Alignment:
Q  539 aagaattattttgtttagcatgcatatttttcattggtgtg 579  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  4363514 aagaactattttgtttagcatgcatctttttcattggtgtg 4363554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 4119071 - 4119009
Alignment:
Q  350 ctttaaaaatgttttaacattcaatttggata----ccagtactcataaaagaaaggcatttct 409  Q
    |||||||||||||| | |||||||||||||||    ||||| ||||||||||||||||||||||    
T  4119071 ctttaaaaatgtttga-cattcaatttggatatataccagtgctcataaaagaaaggcatttct 4119009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 582 - 666
Target Start/End: Complemental strand, 28372598 - 28372514
Alignment:
Q  582 aatattctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat 666  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28372598 aatatcctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat 28372514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 582 - 666
Target Start/End: Complemental strand, 28380420 - 28380336
Alignment:
Q  582 aatattctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacatcacctcgacggttat 666  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28380420 aatatcctcgaattcataagagatttctttgtctatgtatcataccatttgatcttttaggtcaagacgtcacctcgacggttat 28380336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University