View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18941_low_12 (Length: 268)

Name: NF18941_low_12
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18941_low_12
NF18941_low_12
[»] chr7 (16 HSPs)
chr7 (4-260)||(16186667-16186924)
chr7 (4-119)||(4690704-4690820)
chr7 (4-119)||(15575690-15575806)
chr7 (13-119)||(43745551-43745657)
chr7 (4-119)||(47095347-47095463)
chr7 (40-116)||(48212807-48212883)
chr7 (4-108)||(18874706-18874810)
chr7 (4-119)||(20252223-20252343)
chr7 (4-64)||(19195562-19195622)
chr7 (4-70)||(708470-708537)
chr7 (119-186)||(47095266-47095332)
chr7 (39-68)||(25943213-25943242)
chr7 (40-68)||(8930844-8930872)
chr7 (119-159)||(15307522-15307562)
chr7 (119-155)||(18874833-18874869)
chr7 (4-67)||(43276785-43276848)
[»] chr5 (12 HSPs)
chr5 (4-157)||(18744723-18744885)
chr5 (4-119)||(23199248-23199364)
chr5 (4-119)||(660685-660800)
chr5 (40-119)||(1627146-1627225)
chr5 (13-73)||(21504081-21504141)
chr5 (119-186)||(1627240-1627306)
chr5 (13-64)||(16063701-16063752)
chr5 (119-186)||(23199379-23199445)
chr5 (4-64)||(6551331-6551392)
chr5 (40-68)||(21398724-21398752)
chr5 (40-68)||(22111923-22111951)
chr5 (13-68)||(24068175-24068231)
[»] chr1 (8 HSPs)
chr1 (4-186)||(12710698-12710878)
chr1 (4-119)||(28476775-28476891)
chr1 (4-119)||(24719551-24719667)
chr1 (4-67)||(39061268-39061332)
chr1 (40-68)||(20588581-20588609)
chr1 (40-68)||(20593119-20593147)
chr1 (40-68)||(34392713-34392741)
chr1 (13-68)||(40390096-40390152)
[»] scaffold0162 (2 HSPs)
scaffold0162 (13-119)||(23933-24039)
scaffold0162 (119-186)||(24054-24120)
[»] chr2 (9 HSPs)
chr2 (4-119)||(21335307-21335423)
chr2 (4-119)||(21315517-21315633)
chr2 (4-120)||(21369187-21369304)
chr2 (13-94)||(23610546-23610627)
chr2 (5-72)||(28652593-28652662)
chr2 (4-67)||(25584303-25584367)
chr2 (119-157)||(21369135-21369173)
chr2 (4-68)||(19647180-19647245)
chr2 (40-68)||(25584190-25584218)
[»] chr8 (11 HSPs)
chr8 (4-119)||(18816336-18816452)
chr8 (4-157)||(4380658-4380819)
chr8 (13-119)||(21514586-21514692)
chr8 (13-67)||(12577826-12577881)
chr8 (119-157)||(21514533-21514571)
chr8 (4-64)||(36732453-36732514)
chr8 (40-68)||(18834371-18834399)
chr8 (40-68)||(21399662-21399690)
chr8 (4-75)||(21676632-21676704)
chr8 (40-68)||(21794155-21794183)
chr8 (40-68)||(23884116-23884144)
[»] scaffold0878 (1 HSPs)
scaffold0878 (13-119)||(3473-3579)
[»] scaffold0853 (1 HSPs)
scaffold0853 (13-186)||(2507-2692)
[»] scaffold0369 (1 HSPs)
scaffold0369 (13-119)||(15666-15772)
[»] chr3 (20 HSPs)
chr3 (4-112)||(17208426-17208535)
chr3 (44-119)||(24547095-24547170)
chr3 (13-119)||(14520341-14520447)
chr3 (44-119)||(24549033-24549108)
chr3 (13-73)||(21845702-21845762)
chr3 (119-186)||(17208338-17208404)
chr3 (119-186)||(24547014-24547080)
chr3 (13-68)||(48631278-48631333)
chr3 (40-68)||(3527233-3527261)
chr3 (40-68)||(6156656-6156684)
chr3 (40-68)||(6159350-6159378)
chr3 (32-68)||(12155094-12155130)
chr3 (40-68)||(14442120-14442148)
chr3 (40-68)||(17669777-17669805)
chr3 (40-68)||(17684914-17684942)
chr3 (4-70)||(29907582-29907650)
chr3 (4-70)||(29948748-29948816)
chr3 (4-70)||(29997902-29997970)
chr3 (40-72)||(50350896-50350928)
chr3 (40-68)||(54875553-54875581)
[»] chr4 (10 HSPs)
chr4 (4-119)||(25513746-25513862)
chr4 (13-119)||(2424438-2424544)
chr4 (4-119)||(26446102-26446218)
chr4 (4-87)||(14631062-14631146)
chr4 (119-186)||(2424559-2424625)
chr4 (194-233)||(14645595-14645634)
chr4 (4-67)||(33186850-33186914)
chr4 (5-72)||(45314124-45314193)
chr4 (40-68)||(9622434-9622462)
chr4 (40-68)||(55583141-55583169)
[»] scaffold0056 (1 HSPs)
scaffold0056 (4-119)||(18170-18286)
[»] scaffold0414 (1 HSPs)
scaffold0414 (40-119)||(11239-11318)
[»] chr6 (8 HSPs)
chr6 (4-119)||(20410553-20410667)
chr6 (4-97)||(15998806-15998900)
chr6 (59-119)||(21686158-21686218)
chr6 (13-68)||(1818899-1818954)
chr6 (119-186)||(20410682-20410748)
chr6 (13-59)||(21683126-21683171)
chr6 (5-72)||(25601371-25601437)
chr6 (4-70)||(18982515-18982583)
[»] scaffold0231 (2 HSPs)
scaffold0231 (4-119)||(17562-17678)
scaffold0231 (119-157)||(17693-17731)
[»] scaffold0203 (1 HSPs)
scaffold0203 (4-119)||(17981-18097)
[»] scaffold0516 (1 HSPs)
scaffold0516 (13-119)||(5356-5462)
[»] scaffold0032 (1 HSPs)
scaffold0032 (4-119)||(61889-62008)
[»] scaffold1186 (1 HSPs)
scaffold1186 (4-87)||(1947-2031)
[»] scaffold0005 (2 HSPs)
scaffold0005 (4-87)||(186237-186321)
scaffold0005 (194-233)||(171657-171696)
[»] scaffold0213 (2 HSPs)
scaffold0213 (4-67)||(19154-19218)
scaffold0213 (15-60)||(19115-19160)
[»] scaffold0462 (2 HSPs)
scaffold0462 (18-67)||(1264-1313)
scaffold0462 (18-67)||(6770-6819)
[»] scaffold0017 (1 HSPs)
scaffold0017 (4-72)||(26669-26738)
[»] scaffold0505 (1 HSPs)
scaffold0505 (4-72)||(4878-4948)
[»] scaffold0139 (1 HSPs)
scaffold0139 (13-67)||(40214-40268)
[»] scaffold0125 (1 HSPs)
scaffold0125 (4-72)||(28493-28563)
[»] scaffold0676 (1 HSPs)
scaffold0676 (4-64)||(2831-2892)
[»] scaffold0247 (1 HSPs)
scaffold0247 (4-68)||(1022-1087)
[»] scaffold0092 (1 HSPs)
scaffold0092 (4-64)||(38482-38543)
[»] scaffold0058 (1 HSPs)
scaffold0058 (4-64)||(59696-59757)
[»] scaffold1939 (1 HSPs)
scaffold1939 (32-68)||(74-110)
[»] scaffold0555 (1 HSPs)
scaffold0555 (40-68)||(8825-8853)
[»] scaffold0379 (1 HSPs)
scaffold0379 (40-68)||(10893-10921)
[»] scaffold0261 (1 HSPs)
scaffold0261 (5-72)||(6461-6529)
[»] scaffold0174 (1 HSPs)
scaffold0174 (40-68)||(19801-19829)
[»] scaffold0098 (1 HSPs)
scaffold0098 (40-68)||(40052-40080)
[»] scaffold0007 (1 HSPs)
scaffold0007 (4-70)||(16460-16528)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 16186924 - 16186667
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16186924 ataattctgaaaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 16186825  T
Q  103 tcttcttctacccataaaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgttaatatttttgaattc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16186824 tcttcttctacccataaaagtgattattgtggatttaattggttttatttgtgctctatttgttgctgtaatttttgggtatgttaatatttttgaattc 16186725  T
Q  203 attattttcatgtgttaaattcgtaattgattcttagttatgttgtttgttgatgatg 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16186724 attattttcatgtgttaaattcgtaattgattcttagttatgttgtttgtcgatgatg 16186667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 4690704 - 4690820
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  4690704 ataattctgaaaaagggtttaaccttgtagttgttattacttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctcattt 4690803  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  4690804 tctacttctacccataa 4690820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 15575690 - 15575806
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| |  |||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15575690 ataattctgaaaaagggtttaaccttgtacttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 15575789  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  15575790 tctacttctacccataa 15575806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 43745657 - 43745551
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||||||||||||||| | ||||||  |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  43745657 aaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagagttagatttcattcataatcttttgtataatctctttttctacttcta 43745558  T
Q  113 cccataa 119  Q
    |||||||    
T  43745557 cccataa 43745551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 47095463 - 47095347
Alignment:
Q  4 ataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    |||||||||||||  ||||||||||| | ||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  47095463 ataattctgaaaaatggtttaaccttgtagttgttgttaggtttgatgttatagaaattagggttaaatttcattcataatcttttgtataaactctttt 47095364  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  47095363 tctacttctacccataa 47095347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 48212807 - 48212883
Alignment:
Q  40 tagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttctaccca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48212807 tagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttctacttctaccca 48212883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 18874706 - 18874810
Alignment:
Q  4 ataattctgaaaa---gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctt 100  Q
    |||||||||||||   |||||||||||| | ||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18874706 ataattctgaaaaaaggggtttaaccttgtagttg---gtagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctt 18874802  T
Q  101 tttcttct 108  Q
    ||||||||    
T  18874803 tttcttct 18874810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 20252223 - 20252343
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagat----ttcattcataatctttcgtataatctc 98  Q
    ||||||||||||| ||||||||| || | ||||||| ||||||| ||||||||||||||||| ||||||    |||||||||||||||| |||||||||     
T  20252223 ataattctgaaaaagggtttaacattgtagttgttattagttttaatgttatagaaattaggattagatttcattcattcataatcttttgtataatcta 20252322  T
Q  99 tttttcttcttctacccataa 119  Q
    ||||||| |||||||||||||    
T  20252323 tttttctacttctacccataa 20252343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 19195622 - 19195562
Alignment:
Q  4 ataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagg 64  Q
    ||||||||||||||||||||||||| | ||||||  ||||||||||||||||| |||||||    
T  19195622 ataattctgaaaagggtttaaccttgtagttgttgttagttttgatgttataggaattagg 19195562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 708470 - 708537
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttaga 70  Q
    ||||||||||||| |||||||||||| | |||| |  ||||||||||||||||| ||||||| |||||    
T  708470 ataattctgaaaaagggtttaaccttgtagttgctgttagttttgatgttataggaattaggtttaga 708537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 47095332 - 47095266
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  47095332 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 47095266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 25943242 - 25943213
Alignment:
Q  39 gtagttttgatgttatagaaattagggtta 68  Q
    ||||||||||||||||||||||||||||||    
T  25943242 gtagttttgatgttatagaaattagggtta 25943213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 8930844 - 8930872
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  8930844 tagttttgatgttatagaaattagggtta 8930872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 15307562 - 15307522
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctct 159  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  15307562 aaagtgattattgtgaatttaattggtgaaatttgtgctct 15307522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 18874833 - 18874869
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtg 155  Q
    |||||||||||||||||||||||||||  ||||||||    
T  18874833 aaagtgattattgtggatttaattggtgaaatttgtg 18874869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 43276785 - 43276848
Alignment:
Q  4 ataattctgaaaagggtttaaccttatggttgttagta-gttttgatgttatagaaattagggtt 67  Q
    ||||||||||||| ||||||||||| | ||||||| || ||||||||||| ||| ||||||||||    
T  43276785 ataattctgaaaatggtttaaccttgtagttgttaataggttttgatgttgtag-aattagggtt 43276848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 157
Target Start/End: Complemental strand, 18744885 - 18744723
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18744885 ataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 18744786  T
Q  103 tcttcttctacccataa--------aagtgattattgtggatttaattggtttaatttgtgct 157  Q
    ||| |||||||||||||        | ||||||||||||||||||||||||  ||||||||||    
T  18744785 tctacttctacccataagtgcctatatgtgattattgtggatttaattggtgaaatttgtgct 18744723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 23199248 - 23199364
Alignment:
Q  4 ataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    |||||||||||||  ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23199248 ataattctgaaaaatggtttaaccttgtagttgttagtagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 23199347  T
Q  103 tcttcttctacccataa 119  Q
    |||||||||||||||||    
T  23199348 tcttcttctacccataa 23199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 660800 - 660685
Alignment:
Q  4 ataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctcttttt 103  Q
    ||||||||||||| ||||||||||| | ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  660800 ataattctgaaaaaggtttaaccttgtagttgttgttagttttgatgttatagaaatttgggttagatttcattcataatcttttgtataatctcttttt 660701  T
Q  104 cttcttctacccataa 119  Q
    || |||||||||||||    
T  660700 ctacttctacccataa 660685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 1627146 - 1627225
Alignment:
Q  40 tagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  1627146 tagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 1627225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 21504141 - 21504081
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagattt 73  Q
    ||||||||||||  || | ||||||||||||||||||||||||||||||||||||| ||||    
T  21504141 aaaagggtttaagtttgtagttgttagtagttttgatgttatagaaattagggttaaattt 21504081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 1627240 - 1627306
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  1627240 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 1627306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 16063752 - 16063701
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagg 64  Q
    |||||||||||||||| | ||||||  ||||||||||||||||| |||||||    
T  16063752 aaaagggtttaaccttgtagttgttgttagttttgatgttataggaattagg 16063701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 23199379 - 23199445
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  23199379 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 23199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 6551331 - 6551392
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagg 64  Q
    ||||||||||||| |||||||||||| | ||||||  ||| ||||||||||||| |||||||    
T  6551331 ataattctgaaaaagggtttaaccttgtagttgttgttagatttgatgttataggaattagg 6551392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 21398724 - 21398752
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  21398724 tagttttgatgttatagaaattagggtta 21398752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 22111951 - 22111923
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  22111951 tagttttgatgttatagaaattagggtta 22111923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 24068231 - 24068175
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtag-ttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||| | ||||||| ||| ||||||||||| ||| ||||||||||    
T  24068231 aaaagggtttaaccttgtagttgttaataggttttgatgttaaagagattagggtta 24068175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 186
Target Start/End: Complemental strand, 12710878 - 12710698
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||| ||| | ||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  12710878 ataattctgaaaaagggtttaatcttgtagttgttgttagttttgatgttatagaaattaaggttagatttcattcataatcttttgtataatctctttt 12710779  T
Q  103 tcttcttctacccataaaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    ||| |||||||||||  |||||||||||||| |||||||||||  |||| ||||| ||| | ||| || ||| |||||||||||    
T  12710778 tctacttctacccat--aagtgattattgtgaatttaattggtgaaattcgtgct-tatgttttgatgcaatgtttgggtatgt 12710698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 28476775 - 28476891
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28476775 ataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 28476874  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  28476875 tctacttctacccataa 28476891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 24719551 - 24719667
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||    
T  24719551 ataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaattaaggttaaatttcattcataatcttttgtataatctttttt 24719650  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  24719651 tctacttctacccataa 24719667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 39061332 - 39061268
Alignment:
Q  4 ataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 67  Q
    |||||||||||||  ||||||||||| | ||||||  ||||||||||||||||||| ||||||||    
T  39061332 ataattctgaaaaaaggtttaaccttgtagttgttgatagttttgatgttatagaatttagggtt 39061268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 20588609 - 20588581
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  20588609 tagttttgatgttatagaaattagggtta 20588581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 20593147 - 20593119
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  20593147 tagttttgatgttatagaaattagggtta 20593119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 34392741 - 34392713
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  34392741 tagttttgatgttatagaaattagggtta 34392713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 40390152 - 40390096
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtag-ttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||| | ||||||| ||| ||||||||||| ||| ||||||||||    
T  40390152 aaaagggtttaaccttgtagttgttaataggttttgatgttaaagatattagggtta 40390096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 23933 - 24039
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  23933 aaaagggtttaaccttgtagttgttattagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttctacttcta 24032  T
Q  113 cccataa 119  Q
    |||||||    
T  24033 cccataa 24039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 24054 - 24120
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  24054 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 24120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 21335307 - 21335423
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  21335307 ataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaattatggttagatttcattcataatcttttgtataatctctttt 21335406  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  21335407 tctacttctacccataa 21335423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 21315517 - 21315633
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  21315517 ataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaattattgttagatttcattcataatcttttgtataatctctttt 21315616  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  21315617 tctacttctacccataa 21315633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 21369304 - 21369187
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | |||  || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21369304 ataattctgaaaaagggtttaaccttgtagtttatattagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 21369205  T
Q  103 tcttcttctacccataaa 120  Q
    ||| || |||||||||||    
T  21369204 tctactactacccataaa 21369187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 23610627 - 23610546
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataa 94  Q
    |||| ||||||||||| | ||||||  | |||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  23610627 aaaatggtttaaccttctagttgttgtttgttttgatgttatagaaattagggttagatttaattcataatcttttgtataa 23610546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 28652593 - 28652662
Alignment:
Q  5 taattctgaaaa-gggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 72  Q
    |||||||||||| ||||||| ||||  | ||||||  |||||||||||||||||||||||||||||||||    
T  28652593 taattctgaaaaagggtttagcctttgtagttgttgttagttttgatgttatagaaattagggttagatt 28652662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 25584303 - 25584367
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 67  Q
    ||||||||||||| |||||||||||| | |||| |  ||||||||||||||||||| ||||||||    
T  25584303 ataattctgaaaaagggtttaaccttgtcgttgatgatagttttgatgttatagaagttagggtt 25584367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 21369173 - 21369135
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgct 157  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  21369173 aaagtgattattgtggatttaattggtgaaatttgtgct 21369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 19647245 - 19647180
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 68  Q
    ||||||||||||| |||||||| ||| | ||||||| ||||||||||  ||||||| |||||||||    
T  19647245 ataattctgaaaaagggtttaatcttgtagttgttaatagttttgattgtatagaagttagggtta 19647180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 25584190 - 25584218
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  25584190 tagttttgatgttatagaaattagggtta 25584218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 18816336 - 18816452
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18816336 ataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 18816435  T
Q  103 tcttcttctacccataa 119  Q
    ||| ||||||| |||||    
T  18816436 tctacttctactcataa 18816452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 4380658 - 4380819
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4380658 ataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 4380757  T
Q  103 tcttcttctacccata-------aaagtgattattgtggatttaattggtttaatttgtgct 157  Q
    ||| ||||||  | ||       ||||||||||||||| |||||||||||  ||||||||||    
T  4380758 tctacttctaagcctatttgtataaagtgattattgtgaatttaattggtgaaatttgtgct 4380819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 21514692 - 21514586
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  21514692 aaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttatacttcta 21514593  T
Q  113 cccataa 119  Q
    |||||||    
T  21514592 cccataa 21514586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 12577881 - 12577826
Alignment:
Q  13 aaaagggtttaacctt-atggttgttagtagttttgatgttatagaaattagggtt 67  Q
    |||||||||||||||| || ||||||  |||||||||||||||||| |||||||||    
T  12577881 aaaagggtttaacctttatagttgttgttagttttgatgttatagagattagggtt 12577826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 21514571 - 21514533
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgct 157  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  21514571 aaagtgattattgtggatttaattggtgaaatttgtgct 21514533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 36732453 - 36732514
Alignment:
Q  4 ataattctgaaaagg-gtttaaccttatggttgttagtagttttgatgttatagaaattagg 64  Q
    ||||||||||||| | |||||||||| | ||||||  ||||||||||||||||| |||||||    
T  36732453 ataattctgaaaaagagtttaaccttgtagttgttgttagttttgatgttataggaattagg 36732514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 18834399 - 18834371
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  18834399 tagttttgatgttatagaaattagggtta 18834371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 21399690 - 21399662
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  21399690 tagttttgatgttatagaaattagggtta 21399662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 21676632 - 21676704
Alignment:
Q  4 ataattctgaaa-agggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttca 75  Q
    |||||| ||||| |||||||||| || | ||||||  |||||||||| |||||||||||||| ||| ||||||    
T  21676632 ataattatgaaatagggtttaactttgtagttgttgatagttttgatattatagaaattaggtttaaatttca 21676704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 21794183 - 21794155
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  21794183 tagttttgatgttatagaaattagggtta 21794155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 23884144 - 23884116
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  23884144 tagttttgatgttatagaaattagggtta 23884116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 3473 - 3579
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||||||||||||||| | ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||    
T  3473 aaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttatatttcattcataatcttttgtataatctctttttctacttcta 3572  T
Q  113 cccataa 119  Q
    |||||||    
T  3573 cccataa 3579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 2507 - 2692
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||| ||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  2507 aaaatggtttaaccttgtagtcgttattagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttctacttcta 2606  T
Q  113 cccataa-------------aagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||             ||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  2607 cccataagtgtctacgtataaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 2692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 15666 - 15772
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  15666 aaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttctacttcta 15765  T
Q  113 cccataa 119  Q
    | |||||    
T  15766 cacataa 15772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 17208535 - 17208426
Alignment:
Q  4 ataattctgaaaaggg-tttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| || ||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17208535 ataattctgaaaaaggatttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttt 17208436  T
Q  103 tcttcttcta 112  Q
    ||||||||||    
T  17208435 tcttcttcta 17208426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 24547170 - 24547095
Alignment:
Q  44 tttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  24547170 tttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 24547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 14520447 - 14520341
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||| ||||||||||| | ||||||  |||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||    
T  14520447 aaaaaggtttaaccttgtagttgttgttagttttgatgttataaaaattagggttaaatttcactcataatcttttgtataatctctttttctacttcta 14520348  T
Q  113 cccataa 119  Q
    |||||||    
T  14520347 cccataa 14520341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 24549033 - 24549108
Alignment:
Q  44 tttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  24549033 tttgatgttatagaaattagggttagatttcattcataatattttgtacaatctctttttctacttctacccataa 24549108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 21845702 - 21845762
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagattt 73  Q
    |||||||||||| ||| | ||||||| ||||||||||||||||||||||||| || |||||    
T  21845702 aaaagggtttaagcttgtagttgttaatagttttgatgttatagaaattaggttttgattt 21845762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 17208404 - 17208338
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  17208404 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 17208338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 24547080 - 24547014
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||  |||||| |||||||||||    
T  24547080 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttaatgtaatatttgggtatgt 24547014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 48631333 - 48631278
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 68  Q
    |||||||||||| ||| | ||||||| ||||||||||||||||||| | |||||||    
T  48631333 aaaagggtttaagcttgtagttgttaatagttttgatgttatagaagtcagggtta 48631278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 3527233 - 3527261
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  3527233 tagttttgatgttatagaaattagggtta 3527261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 6156684 - 6156656
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  6156684 tagttttgatgttatagaaattagggtta 6156656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 6159378 - 6159350
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  6159378 tagttttgatgttatagaaattagggtta 6159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 12155094 - 12155130
Alignment:
Q  32 gttgttagtagttttgatgttatagaaattagggtta 68  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  12155094 gttgttaatagttttgatgttatagaagttagggtta 12155130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 14442148 - 14442120
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  14442148 tagttttgatgttatagaaattagggtta 14442120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 17669777 - 17669805
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  17669777 tagttttgatgttatagaaattagggtta 17669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 17684914 - 17684942
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  17684914 tagttttgatgttatagaaattagggtta 17684942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 29907650 - 29907582
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatg-ttatagaaattagggttaga 70  Q
    ||||||||||||| |||||||||||| | ||||||  ||| ||||||| ||| ||||||||||||||||    
T  29907650 ataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaattagggttaga 29907582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 29948816 - 29948748
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatg-ttatagaaattagggttaga 70  Q
    ||||||||||||| |||||||||||| | ||||||  ||| ||||||| ||| ||||||||||||||||    
T  29948816 ataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaattagggttaga 29948748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 29997970 - 29997902
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatg-ttatagaaattagggttaga 70  Q
    ||||||||||||| |||||||||||| | ||||||  ||| ||||||| ||| ||||||||||||||||    
T  29997970 ataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaattagggttaga 29997902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 50350896 - 50350928
Alignment:
Q  40 tagttttgatgttatagaaattagggttagatt 72  Q
    |||||||||||||||||| ||||||||||||||    
T  50350896 tagttttgatgttatagagattagggttagatt 50350928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 54875553 - 54875581
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  54875553 tagttttgatgttatagaaattagggtta 54875581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 25513862 - 25513746
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| ||||||||| || | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  25513862 ataattctgaaaaagggtttaacattgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctatttt 25513763  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  25513762 tctacttctacccataa 25513746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 2424438 - 2424544
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||||||||||| ||| | ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||    
T  2424438 aaaagggtttaatcttgtagttgttattagttttgatgttatagaaattagggttcgatttcattcataatcttttgtataatctatttttctacttcta 2424537  T
Q  113 cccataa 119  Q
    |||||||    
T  2424538 cccataa 2424544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 26446218 - 26446102
Alignment:
Q  4 ataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    |||||||||||||  ||||||| ||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  26446218 ataattctgaaaaatggtttaatcttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatatctttt 26446119  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  26446118 tctacttctacccataa 26446102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 14631146 - 14631062
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatcttt 87  Q
    ||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14631146 ataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcgttcataatcttt 14631062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 2424559 - 2424625
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  2424559 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 2424625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 14645634 - 14645595
Alignment:
Q  194 tttgaattcattattttcatgtgttaaattcgtaattgat 233  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  14645634 tttgaattcattattttcatgtgctaaattcgtagttgat 14645595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 33186914 - 33186850
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagta-gttttgatgttatagaaattagggtt 67  Q
    ||||||||||||| |||||||||||| ||||||||| || ||||||||||| ||| ||||||||||    
T  33186914 ataattctgaaaaagggtttaaccttgtggttgttaataggttttgatgttgtag-aattagggtt 33186850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 45314124 - 45314193
Alignment:
Q  5 taattctgaaaa-gggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 72  Q
    |||||||||||| ||||||||| ||  | ||||||  |||||||||||||||||| ||||||||||||||    
T  45314124 taattctgaaaaagggtttaacatttgtagttgttgttagttttgatgttatagagattagggttagatt 45314193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 9622462 - 9622434
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  9622462 tagttttgatgttatagaaattagggtta 9622434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 55583169 - 55583141
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  55583169 tagttttgatgttatagaaattagggtta 55583141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 18286 - 18170
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||  | |||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  18286 ataattctgaaaaagggtttaaccttgtagttgttgttggttttgattttatagaaattagggttagatttcattcataatcttctgtataatctctttt 18187  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  18186 tctacttctacccataa 18170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 11239 - 11318
Alignment:
Q  40 tagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 119  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11239 tagttttgatgttatataaattagggttagatttcattcataatcttttgtataatctctttttcttcttctacccataa 11318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 20410553 - 20410667
Alignment:
Q  4 ataattctgaaaaggg-tttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| || ||||||||| | ||||||| |||||||||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  20410553 ataattctgaaaaaggatttaaccttgtagttgttattagttttgatg--atagaaattagggttagatctcattcataatcttttgtataatctctttt 20410650  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  20410651 tctacttctacccataa 20410667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 15998900 - 15998806
Alignment:
Q  4 ataattctgaaaagg-gtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatct 97  Q
    ||||||||||||| | |||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  15998900 ataattctgaaaaagagtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattgataatcttttgtataatct 15998806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 21686158 - 21686218
Alignment:
Q  59 attagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  21686158 attagggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 21686218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 1818954 - 1818899
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 68  Q
    |||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||    
T  1818954 aaaagggtttaagcttgtagttgttaatagttttgatgttatagaaattagggtta 1818899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 20410682 - 20410748
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 186  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  20410682 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 20410748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 21683126 - 21683171
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaa 59  Q
    |||||||||||||||| | |||||| |||||||||||||||||||||    
T  21683126 aaaagggtttaaccttgtagttgtt-gtagttttgatgttatagaaa 21683171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 25601371 - 25601437
Alignment:
Q  5 taattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatt 72  Q
    |||||||||||| ||||||||||||   || |||  ||||||| |||||||||||||||||||||||||    
T  25601371 taattctgaaaaagggtttaaccttt--gtagttgttagttttcatgttatagaaattagggttagatt 25601437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 18982583 - 18982515
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatg-ttatagaaattagggttaga 70  Q
    ||||||||||||| |||||||||||| | ||||||  ||| ||||||| ||| ||||||||||||||||    
T  18982583 ataattctgaaaaagggtttaaccttgtagttgttgctaggtttgatgattagagaaattagggttaga 18982515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 17562 - 17678
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| |||||||||||| | ||||||  |||||||| |||||||||||||||||||| |||||||||||||||||| ||| |||| |||||    
T  17562 ataattctgaaaaagggtttaaccttgtagttgttgttagttttgctgttatagaaattagggttatatttcattcataatcttttgtacaatcactttt 17661  T
Q  103 tcttcttctacccataa 119  Q
    ||| |||||||||||||    
T  17662 tctacttctacccataa 17678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 17693 - 17731
Alignment:
Q  119 aaagtgattattgtggatttaattggtttaatttgtgct 157  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  17693 aaagtgattattgtggatttaattggtcaaatttgtgct 17731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 17981 - 18097
Alignment:
Q  4 ataattctgaaaaggg-tttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttt 102  Q
    ||||||||||||| || ||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  17981 ataattctgaaaaaggatttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcattcataatattttgtttaatctctttt 18080  T
Q  103 tcttcttctacccataa 119  Q
    | | |||||||||||||    
T  18081 tttacttctacccataa 18097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 5356 - 5462
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 112  Q
    |||||||||||||||| | ||||||  | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| |||| |    
T  5356 aaaagggtttaaccttgtagttgttgttcgttttgatgttatagatattagggttagatttcattcataatcttttgtataatctccttttctacttcaa 5455  T
Q  113 cccataa 119  Q
    |||||||    
T  5456 cccataa 5462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 61889 - 62008
Alignment:
Q  4 ataattctgaaaagggtttaaccttatggttgttagtagttttgatgttata----gaaattagggttagatttcattcataatctttcgtataatctct 99  Q
    ||||||||||||||| ||||||||| | ||||||  ||||||||||||||||    |||||||||||||||||||||||||||||||| || ||||||||    
T  61889 ataattctgaaaaggatttaaccttgtagttgttgttagttttgatgttatatatagaaattagggttagatttcattcataatcttttgtttaatctct 61988  T
Q  100 ttttcttcttctacccataa 119  Q
    |||||| |||||||| ||||    
T  61989 ttttctacttctacctataa 62008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 2031 - 1947
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatcttt 87  Q
    ||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2031 ataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcgttcataatcttt 1947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 186237 - 186321
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatcttt 87  Q
    ||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  186237 ataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaattagggttagatttcgttcataatcttt 186321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 171657 - 171696
Alignment:
Q  194 tttgaattcattattttcatgtgttaaattcgtaattgat 233  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  171657 tttgaattcattattttcatgtgctaaattcgtagttgat 171696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 19218 - 19154
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 67  Q
    ||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  19218 ataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaataagggtt 19154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 19160 - 19115
Alignment:
Q  15 aagggtttaaccttatggttgttagtagttttgatgttatagaaat 60  Q
    |||||||||||||| | ||||||  |||||||||||||||||||||    
T  19160 aagggtttaaccttgtagttgttgatagttttgatgttatagaaat 19115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 1313 - 1264
Alignment:
Q  18 ggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 67  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||    
T  1313 ggtttaaccttatagttgttgatagttttgatgttatagaaataagggtt 1264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 6819 - 6770
Alignment:
Q  18 ggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 67  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||    
T  6819 ggtttaaccttatagttgttgatagttttgatgttatagaaataagggtt 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 26738 - 26669
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatt 72  Q
    ||||||||||||| ||||||||| || | ||||||  ||| |||||||||||||| ||||||||||||||    
T  26738 ataattctgaaaaagggtttaactttgtagttgttgttagctttgatgttatagagattagggttagatt 26669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 4948 - 4878
Alignment:
Q  4 ataattctg-aaaagggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 72  Q
    ||||||||| ||||||||||||||||  | ||||||  |||||||||||||||||  ||||||||||||||    
T  4948 ataattctgtaaaagggtttaacctttgtagttgttgttagttttgatgttatagtgattagggttagatt 4878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 40214 - 40268
Alignment:
Q  13 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 67  Q
    |||||||||||||| | | ||||||  ||||||||||||||||||| ||||||||    
T  40214 aaaagggtttaaccatgtagttgttgatagttttgatgttatagaagttagggtt 40268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 28563 - 28493
Alignment:
Q  4 ataattctgaaaa-gggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 72  Q
    ||||||||||||| ||||||||||||  | ||||||  ||||||| |||||||||| ||||||||||||||    
T  28563 ataattctgaaaaagggtttaacctttgtagttgttgttagtttttatgttatagagattagggttagatt 28493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 2892 - 2831
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagg 64  Q
    ||||||||||||| |||||||||||| | ||||||  |||||| |||||||||| |||||||    
T  2892 ataattctgaaaaagggtttaaccttgtagttgttgttagtttcgatgttataggaattagg 2831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 1087 - 1022
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 68  Q
    ||||||||||||| |||||||||||| | | ||||  ||||||||||||| ||||||||| |||||    
T  1087 ataattctgaaaaagggtttaaccttgtagatgttgttagttttgatgttttagaaattatggtta 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 38482 - 38543
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagg 64  Q
    ||||||||||||| ||||||||  || | ||||||| ||||||||||||||||||| |||||    
T  38482 ataattctgaaaaagggtttaattttgtagttgttaatagttttgatgttatagaagttagg 38543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 59696 - 59757
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagg 64  Q
    ||||||||||||| ||||||||| || | ||||||  |||||||||| ||||||||||||||    
T  59696 ataattctgaaaaagggtttaactttgtagttgttgatagttttgatattatagaaattagg 59757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 110 - 74
Alignment:
Q  32 gttgttagtagttttgatgttatagaaattagggtta 68  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  110 gttgttaatagttttgatgttatagaagttagggtta 74  T

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Target: scaffold0555 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 8825 - 8853
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  8825 tagttttgatgttatagaaattagggtta 8853  T

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Target: scaffold0379 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 10921 - 10893
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  10921 tagttttgatgttatagaaattagggtta 10893  T

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Target: scaffold0261 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 6461 - 6529
Alignment:
Q  5 taattctgaaaagggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 72  Q
    ||||||| ||||||||||||||||  | ||||||  |||||||||||||||||| |||| || ||||||    
T  6461 taattctaaaaagggtttaacctttgtagttgttgttagttttgatgttatagagattatggctagatt 6529  T

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Target: scaffold0174 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 19829 - 19801
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  19829 tagttttgatgttatagaaattagggtta 19801  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 40080 - 40052
Alignment:
Q  40 tagttttgatgttatagaaattagggtta 68  Q
    |||||||||||||||||||||||||||||    
T  40080 tagttttgatgttatagaaattagggtta 40052  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 16460 - 16528
Alignment:
Q  4 ataattctgaaaa-gggtttaaccttatggttgttagtagttttgatg-ttatagaaattagggttaga 70  Q
    ||||||||||||| |||||||||||| | ||||||  ||| ||||||| ||| ||||||||||||||||    
T  16460 ataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaattagggttaga 16528  T

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