View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18941_low_2 (Length: 782)

Name: NF18941_low_2
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18941_low_2
NF18941_low_2
[»] chr5 (2 HSPs)
chr5 (71-774)||(500094-500794)
chr5 (18-65)||(500861-500908)
[»] chr7 (5 HSPs)
chr7 (445-672)||(25436331-25436558)
chr7 (435-672)||(25484271-25484508)
chr7 (435-672)||(25636512-25636749)
chr7 (437-672)||(25442322-25442557)
chr7 (436-533)||(25478952-25479049)
[»] chr2 (6 HSPs)
chr2 (435-546)||(35105988-35106099)
chr2 (435-546)||(35169648-35169759)
chr2 (435-530)||(35177955-35178050)
chr2 (448-545)||(35055076-35055173)
chr2 (443-527)||(35047044-35047128)
chr2 (435-512)||(35183971-35184048)


Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 71 - 774
Target Start/End: Complemental strand, 500794 - 500094
Alignment:
Q  71 tgagtttgtcttccttcacatgaagcgatctttcag----tgtacgtacttccgctctaattaatcatcctttttatcatatatagtccaagtttgnnnn 166  Q
    |||||||| |||||||||||||||||||||||||||     ||||||||||||||||||||| |||  |||||||||||||| ||||| |||||||        
T  500794 tgagtttgccttccttcacatgaagcgatctttcagggtacgtacgtacttccgctctaatttatc--cctttttatcatatctagtctaagtttgtttt 500697  T
Q  167 nnnacactttatttttctgatcaccataaacactactgaaacttacaacacgtccaaggttcgaatccagagaataggcgtacaacctaacaatatcggc 266  Q
       |||||| |||| ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||    
T  500696 tttacacttcatttctctgatcaggataaacactactgaaacttacaacacgtccaaggtttgaatccagagaataggtatacaacctagcaatatcggc 500597  T
Q  267 attgtcaatagaactagtcttttacgatcgtttctttatactataattgattcaaagttagaaacattttcattcgtatcttatagcagataggtgcaat 366  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  500596 attgtcaatagaacttgtcttttaagatcgtttctttatactataattgattcaaagttagaaacattttcgttcgtatcttatagcagataggtgcaat 500497  T
Q  367 gcctaagcgacggttttgggatctgtcaagttgtagttcttcttctaatagcagcatccaaagctaatctatagatatgatgtgtttatcagttttagag 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||| ||||    
T  500496 gcctaagcgacggttttgggatctgtcaagttgtagttcttcttctaatagcagcatccaaag-----ctatagatatgatgtgtttatcagtttcagag 500402  T
Q  467 gttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatgatgcacagctcaacaaaggtcg 566  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  500401 gttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatgatgcacagctcaacaaaggtca 500302  T
Q  567 ttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatccacatggtgtttggatgaa 666  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  500301 ttctatttcaactcaacttcttcatgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttcatcaacatggtgtttggatgaa 500202  T
Q  667 atggctacaattgctgattgccggttaaatttgaaacaaactgttttctatgatgttgctccgtctgatgtacgaaaacagaaaggtttttatcaggatg 766  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||    
T  500201 atggctacaattgctgattgccagttaaatttgaatcacactgttttctatgatgttgctccgtctgatgtgcgaaaacagaaaggtgtttatcagaatg 500102  T
Q  767 cctttgct 774  Q
     |||||||    
T  500101 tctttgct 500094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 500908 - 500861
Alignment:
Q  18 atgtatgtatgtatccatgcatgtggagtccacaaacattgttgtttt 65  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  500908 atgtatgtacgtatctatgcatgtggagtccacaaacattgttgtttt 500861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 445 - 672
Target Start/End: Complemental strand, 25436558 - 25436331
Alignment:
Q  445 gatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatg 544  Q
    |||||||| ||||||||||||||||| || || |||||  |||||| |||||||||| |  |||||||  |||||||||||||||| ||||| |||||||    
T  25436558 gatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtatttttaccttcaaggatg 25436459  T
Q  545 atgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagattatgcttc 644  Q
    |    |||||| | |||||     | |||||| | |||||||| |  ||||||||||  ||||| |||| ||| ||| ||||||||| ||||||||||||    
T  25436458 acaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattcgacggtcacgggtttgtatcattgttttctcaagagattatgcttc 25436359  T
Q  645 atccacatggtgtttggatgaaatggct 672  Q
    ||| ||||||||||||||||||||||||    
T  25436358 atcaacatggtgtttggatgaaatggct 25436331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 435 - 672
Target Start/End: Original strand, 25484271 - 25484508
Alignment:
Q  435 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 534  Q
    ||||||||| |||||||| |||||||| |||||||| ||||| || ||  | |||| ||| |||||||| |||||||||| |||||||||||||||||||    
T  25484271 ctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtattttcacc 25484370  T
Q  535 tttaaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaag 634  Q
    || ||||||||    |||||  | |||||     | |||||| | |||||||| |  ||||||| ||| |||||  |||||||  || ||||||| ||||    
T  25484371 ttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttctccaaag 25484470  T
Q  635 attatgcttcatccacatggtgtttggatgaaatggct 672  Q
    |||||||||| || ||||||||||||||||||||||||    
T  25484471 attatgcttcttcaacatggtgtttggatgaaatggct 25484508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 435 - 672
Target Start/End: Original strand, 25636512 - 25636749
Alignment:
Q  435 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 534  Q
    ||||| ||||||||| ||||||||||| |||||| | ||||| |||||||| |||| ||| ||||||||||||||||||| ||||||||||||||  |||    
T  25636512 ctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgacc 25636611  T
Q  535 tttaaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaag 634  Q
    || ||||||||   |  |||  | |||||    || ||||||   |||||| | |  ||||||  | | || || |||||||| ||| | ||||| ||||    
T  25636612 ttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaag 25636711  T
Q  635 attatgcttcatccacatggtgtttggatgaaatggct 672  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  25636712 attatgcttcatcaacatggtgtttggatgaaatggct 25636749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 437 - 672
Target Start/End: Original strand, 25442322 - 25442557
Alignment:
Q  437 atagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctt 536  Q
    ||||||| |||||||| ||||||||||||||| | ||||| |||||  | |||| ||| |||||||| | |||||||| ||||||||||||||||  |||    
T  25442322 atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtctt 25442421  T
Q  537 taaggatgatgcacagctcaacaaaggtcgttctatttcaactcaacttcttcgcgcaattcgacaatcacgtgtttctattattattttctcaaaagat 636  Q
     ||||||||   |  |||  | |||||    || ||||||   |||||| | |  ||||||  | | || || |||||||| ||| | ||||| ||||||    
T  25442422 caaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctccaaagat 25442521  T
Q  637 tatgcttcatccacatggtgtttggatgaaatggct 672  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25442522 tatgcttcatcaacatggtgtttggatgaaatggct 25442557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 436 - 533
Target Start/End: Complemental strand, 25479049 - 25478952
Alignment:
Q  436 tatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcac 533  Q
    |||||||| || |||||||||||||| ||||||   ||||| || || || |||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  25479049 tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcac 25478952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 435 - 546
Target Start/End: Complemental strand, 35106099 - 35105988
Alignment:
Q  435 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 534  Q
    ||||||||| || |||||||||||||| |||||| | ||||| |||||||||||||  |||||||| ||||||||||| |  ||||| ||||||||  ||    
T  35106099 ctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtatttttgcc 35106000  T
Q  535 tttaaggatgat 546  Q
    || |||||||||    
T  35105999 ttcaaggatgat 35105988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 435 - 546
Target Start/End: Complemental strand, 35169759 - 35169648
Alignment:
Q  435 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacc 534  Q
    ||||| ||| ||||||||||||||||| |||||  | ||||| || |||||||||| ||||||||| ||||||||||| | |||||| ||| ||||| ||    
T  35169759 ctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgcc 35169660  T
Q  535 tttaaggatgat 546  Q
    || |||||||||    
T  35169659 ttcaaggatgat 35169648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 435 - 530
Target Start/End: Complemental strand, 35178050 - 35177955
Alignment:
Q  435 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtatttt 530  Q
    ||||| ||| || |||||||||||||| |||||| | ||||| ||||||||||||| ||||||||| ||||||||||| |  ||||||||||||||    
T  35178050 ctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttt 35177955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 448 - 545
Target Start/End: Complemental strand, 35055173 - 35055076
Alignment:
Q  448 gtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtattttcacctttaaggatga 545  Q
    ||||| ||||||||||||||| | ||||| ||||| | ||||| ||||||||| ||||||||||| |  ||||||||||||||  |||| ||||||||    
T  35055173 gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatga 35055076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 443 - 527
Target Start/End: Complemental strand, 35047128 - 35047044
Alignment:
Q  443 atgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatctcattagaaaaggtat 527  Q
    ||||||||||||||||||| |||||  ||||||| |||||||||||    ||||||||||||  ||||||||| |||||||||||    
T  35047128 atgatgtgtttatcagtttcagaggcaccgacactcgcaacactttcatcgatcatctctatcatcatctcatcagaaaaggtat 35047044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 435 - 512
Target Start/End: Complemental strand, 35184048 - 35183971
Alignment:
Q  435 ctatagatatgatgtgtttatcagttttagaggttccgacacacgcaacacttttgatgatcatctctatgctcatct 512  Q
    |||||||||||||||||||||||||||  | ||| | ||||| |||| |||||||| |||||||||  ||||||||||    
T  35184048 ctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatct 35183971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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