View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18941_low_3 (Length: 693)
Name: NF18941_low_3
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 25 - 541
Target Start/End: Complemental strand, 41309419 - 41308903
Alignment:
| Q |
25 |
gtggagcagtctatacgagctattactaatctaacaataaatttatgttcagnnnnnnnnagagaaacaaaacatgcaatttgtatttatagatnnnnnn |
124 |
Q |
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| T |
41309419 |
gtggagcagtctatatgagctattactaatctaacaataaatttatgttcaattttttttagagaaacaaaacatgcaatttgtatttatagataaaaaa |
41309320 |
T |
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| Q |
125 |
nnnngacacgaacacctaaggaaaaagcaagcaaccatgtaatttgtgtttagggagaaaacgtgtcaactcaaacaatctagctaactaatgatacttc |
224 |
Q |
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| T |
41309319 |
aatagacacgaacacctaaggaaaa-gcaagcaaccatgtaatttgtgtttagggagaaaacgtgtcaacccaaacaatctagctaactaatgatacttc |
41309221 |
T |
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| Q |
225 |
tcatttattatctccttcaacaaccttcctaatcctaatgaactaaaagctcaaatgcatattgctacatatatataacaagaaaatagagctcattcgg |
324 |
Q |
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| T |
41309220 |
tcatttattatctccttcaacaaccttcctaatcctaatgaactaaaagctcaaatgcatattgctacatatatataacaagaaaatagagctcattcgg |
41309121 |
T |
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| Q |
325 |
attcaattgctcctcaaattatagttagaaatgaatcaaaattggaaggaaggtagtagtaaaggaaaagatgaagcaaagaatacataaacaaattcag |
424 |
Q |
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| T |
41309120 |
attcaattgctcctcaaattatagttagaaatgaatcaaaattggaaggaaggtagtagtaaaggaaaagatgaagcaaagaaaacataaacaaattcag |
41309021 |
T |
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| Q |
425 |
aaggagaatcagcggag-nnnnnnntgagaaaggagatgaatgagaagataacaaaattaaaagtcttgatctgatgcttaatcctatccaaaatctcac |
523 |
Q |
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| T |
41309020 |
aaggagaatcagcagagaaaaaaaatgagaaaggggatgaatgagaagataacaaaattaaaagtcttgatctgatgcttaatcctatccaaaatctcac |
41308921 |
T |
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| Q |
524 |
ttttagaattaaaagaaa |
541 |
Q |
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| T |
41308920 |
ttttagaattacaagaaa |
41308903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 583 - 677
Target Start/End: Complemental strand, 41308908 - 41308814
Alignment:
| Q |
583 |
aagaaataatatttgataattagaagataggagaaagattcaaaccgtttttaacatcatcatctcttatagtttatcttaattttgtctaaaat |
677 |
Q |
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| T |
41308908 |
aagaaataatatttgataattagaagataggagaaagattcaaaccgtttttaacatcatcatctcttatagtttatcttaattttgtctaaaat |
41308814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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