View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18941_low_6 (Length: 475)
Name: NF18941_low_6
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 39411660 - 39411203
Alignment:
| Q |
1 |
tactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411660 |
tactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatcc |
39411561 |
T |
|
| Q |
101 |
acttctacttttcttagtgaaagtgatatcaaattcttgaatggaataaagtcacaattggttggattgtaaacaatacaacattcaagacgaagatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411560 |
acttctacttttcttagtgaaagtgatatcaaattcttgaatggaataaagtcacaattggttggattgtaaacaatacaacattcaagacgaagatgtt |
39411461 |
T |
|
| Q |
201 |
ttagagcataagcattaggctccgaaaataagtcaaaggcaaatttgtaatattttcttggactagagtgagctagataaggctctccaagaaagagtaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411460 |
ttagagcataagcattaggctccgaaaataagtcaaaggcaaatttgtaatattttcttggactagagtgagctagataaggctctccaagaaagagtaa |
39411361 |
T |
|
| Q |
301 |
atcgattcttccaactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcactaggaaagaattg |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411360 |
atcgattcttccaactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcactaggaaagaattg |
39411261 |
T |
|
| Q |
401 |
atcaccgggctccgaaaattcttgacaaattgatctactttgttttggaggcacattt |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39411260 |
atcaccgggctccgaaaattcttgacaaattgatctactttgttttggaggcacattt |
39411203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 39403443 - 39403345
Alignment:
| Q |
5 |
atctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatccact |
103 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||| |
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| T |
39403443 |
atctttggtgttgatgatttaaacttacaagaatctaaatagagctcttcaagtagtagacaattagataccaaactttctatgaacatttcattcact |
39403345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 47927366 - 47926916
Alignment:
| Q |
1 |
tactatctttggtgttgatgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatcc |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||| | |||| || ||||| | ||||||||||| ||| ||||| || ||||||||||||||||||||||||||| |
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|
| T |
47927366 |
tactatctttggtattgataatttgaactcacaataaactaagcaaagctcttcaagcagtccacaattagataacaaactttctatgaacatttcatcc |
47927267 |
T |
|
| Q |
101 |
acttctacttttcttagtgaaagtgatatcaaattcttgaatggaataaagtcacaattggttggattgtaaacaatacaacattcaagacgaagatgtt |
200 |
Q |
| |
|
|||| ||||| | |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
47927266 |
acttttacttcattaagtgaaagatatgtcaaattcttgaatggaataaagtcacaattggttggattgcaaacaatacaacattcaagacgtagatgtt |
47927167 |
T |
|
| Q |
201 |
ttagagcataagcattaggctccgaaaataagtcaaaggcaaatttgtaatattttctt------------ggactagagtgagctagataaggctctcc |
288 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||||||| ||||||||||||| |
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|
| T |
47927166 |
ttagagcagaagcagtagtctccgaaaataagtcaaaggcaaatttgtaacgtttgcttggatctgggtgaggattagggtgagctggataaggctctcc |
47927067 |
T |
|
| Q |
289 |
aagaaagagtaaatcgattcttccaactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcact |
388 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
47927066 |
aagaaagagtaaatcgatcattccaactccctttgcaattgcaaaacttatccattgatcaattgtgttgctttgttcacaatttaaatagaagctcact |
47926967 |
T |
|
| Q |
389 |
aggaaagaattgatcaccgggctccgaaaattcttgacaaattgatctact |
439 |
Q |
| |
|
||||||||||||||||| | || |||||||||||||||||||||||||| |
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|
| T |
47926966 |
aggaaagaattgatcactgtgccaggaaaattcttgacaaattgatctact |
47926916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 290 - 398
Target Start/End: Original strand, 47052123 - 47052231
Alignment:
| Q |
290 |
agaaagagtaaatcgattcttccaactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcacta |
389 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| || |||| |||||||||| ||||||||||||| ||| ||| |||||||||| |||||||||||| || | |
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|
| T |
47052123 |
agaaagagtagatccattcttccaactcccctttcaatggcaaaacttacccattgatcaataatgtcgctatgttcacaatctaaatagaagttgacga |
47052222 |
T |
|
| Q |
390 |
ggaaagaat |
398 |
Q |
| |
|
||||||||| |
|
|
| T |
47052223 |
ggaaagaat |
47052231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 48108366 - 48108457
Alignment:
| Q |
312 |
caactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcactaggaaagaattgatc |
403 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| | |||| || ||||| |||||||||||| |||||||||| |||| |
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| T |
48108366 |
caactccccttgcaattgcaaaacttatccattgatcaataatgttgttgtgtttactatttatatagaagttcacaaggaaagaatcgatc |
48108457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 48894265 - 48894188
Alignment:
| Q |
321 |
ttgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaatagaagttcactaggaaagaat |
398 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||| |||||| ||||||| |
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|
| T |
48894265 |
ttgcaattgcaaaacttatccacggatcaatagcagtgctttgttcacagtctaaatagaagctcactataaaagaat |
48894188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 48454140 - 48454203
Alignment:
| Q |
290 |
agaaagagtaaatcgattcttccaactcccattgcaattgcaaaacttatccattgatcaatag |
353 |
Q |
| |
|
||||||| | ||| ||||||| |||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
48454140 |
agaaagaatgaattgattctttcaacactctttgcaattgcaaaacttatccattgatcaatag |
48454203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 48453940 - 48454099
Alignment:
| Q |
18 |
atgatttgaaattacaagaagctaagtagagctcttcaagtagtagacaatcagggaacaaactttctatgaacatttcatccacttctacttttcttag |
117 |
Q |
| |
|
|||||||||| | |||| || |||||| ||||||||||| ||||||||| || |||||||||| ||||| ||||||||||||| | | | || |
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|
| T |
48453940 |
atgatttgaactcacaacaatctaagtgaagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccacttttgcaaattcaag |
48454039 |
T |
|
| Q |
118 |
tgaaagtgatatcaaattcttgaat-ggaataaagtcacaattggttggattgtaaacaa |
176 |
Q |
| |
|
|||||| ||| ||||||| |||||| ||||||||||| || ||||| |||| | |||||| |
|
|
| T |
48454040 |
tgaaagagatctcaaatttttgaatgggaataaagtcccagttggtgggatggcaaacaa |
48454099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 398
Target Start/End: Complemental strand, 50458853 - 50458732
Alignment:
| Q |
277 |
ataaggctctccaagaaagagtaaatcgattcttccaactcccattgcaattgcaaaacttatccattgatcaatagtgttgctttgttcacaatttaaa |
376 |
Q |
| |
|
||||||| ||| ||||| |||| || ||||||| ||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||| |||| |
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|
| T |
50458853 |
ataaggccttcctagaaaaagtagattgattctttcaactcctcttgcaatcgcaaaacttatccattgatcaatattgttactttgttcacaatctaaa |
50458754 |
T |
|
| Q |
377 |
tagaagttcactaggaaagaat |
398 |
Q |
| |
|
|| || ||||||| |||||||| |
|
|
| T |
50458753 |
taaaaattcactacgaaagaat |
50458732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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