View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18941_low_8 (Length: 344)
Name: NF18941_low_8
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 24830754 - 24831033
Alignment:
| Q |
16 |
tatagcataccatcatcatgaaaaacaattaaccctcttaaaaaccttaatcaccttacacagatgcttacaacataaaattaaccagaagcctcaaaat |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
24830754 |
tatagcataccatcatcatgaaaaacaaataaccctcttaaaaaccttaatcaccttacac-------tacaacataaaactaaccagaagcctcaaaat |
24830846 |
T |
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| Q |
116 |
cgcggtgcaatcggaaaccttaattaaacatttttgtctttccaatcaaccatcatcaacattcttgacactatttactgcataatatttgcttctaccc |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24830847 |
cgcggtgcaatcgggaaccttaattaaacatttttgtctttccaatcaaccattatcaacattcttgacactatttactgcataatatttgcttctgccc |
24830946 |
T |
|
| Q |
216 |
tcagaaataacaaggactaagtcgtcacacaaatgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagag |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24830947 |
tcagaaataacaaggactaagtcgtcacacaaatgaatcattatttgctctcattttgcatgcatgtaaaatgaaatgtacacagag |
24831033 |
T |
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