View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18941_low_9 (Length: 326)
Name: NF18941_low_9
Description: NF18941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18941_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 153 - 326
Target Start/End: Original strand, 38186819 - 38186992
Alignment:
| Q |
153 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
252 |
Q |
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| T |
38186819 |
cttaccatcgagggtaaaatgtttggtgaaaggggtacgggggagaaggaaaattttgcatagagaaataatccaaaggaaaatgaaagaagcgattatg |
38186918 |
T |
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| Q |
253 |
agaatcaaggccatgaaggttgaaattcaaacaccaattcaatgattagggctcaaaatgaattgtttttattc |
326 |
Q |
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| T |
38186919 |
agaatcaaggccatgaaggttgaaattgaaacaccaattcaatgattagtgctcaaaatgaattgtttttattc |
38186992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 38186692 - 38186733
Alignment:
| Q |
27 |
catcatcagggtgagcaataaccagcaagacatttctcttcc |
68 |
Q |
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| T |
38186692 |
catcgtcagggtgagcaataaccagcaagacatttctcttcc |
38186733 |
T |
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