View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18943_high_11 (Length: 291)

Name: NF18943_high_11
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18943_high_11
NF18943_high_11
[»] chr1 (20 HSPs)
chr1 (148-281)||(32742363-32742496)
chr1 (1-41)||(11241135-11241175)
chr1 (1-41)||(13136567-13136607)
chr1 (1-41)||(24190577-24190617)
chr1 (4-41)||(52985041-52985078)
chr1 (1-41)||(2126146-2126186)
chr1 (1-41)||(6786946-6786986)
chr1 (1-41)||(15959653-15959693)
chr1 (1-41)||(32624018-32624058)
chr1 (1-41)||(33369658-33369698)
chr1 (1-41)||(35691501-35691541)
chr1 (1-41)||(39555599-39555639)
chr1 (1-37)||(39932585-39932621)
chr1 (1-41)||(46543090-46543130)
chr1 (6-41)||(12448985-12449020)
chr1 (1-41)||(4672939-4672979)
chr1 (1-41)||(6785564-6785603)
chr1 (1-41)||(28016759-28016799)
chr1 (5-41)||(32742219-32742255)
chr1 (1-41)||(40718786-40718826)
[»] chr8 (14 HSPs)
chr8 (1-41)||(8709800-8709840)
chr8 (1-41)||(13143959-13143999)
chr8 (1-41)||(30575848-30575888)
chr8 (1-41)||(43216361-43216401)
chr8 (1-41)||(7022417-7022457)
chr8 (1-37)||(7858638-7858674)
chr8 (1-41)||(15824651-15824691)
chr8 (1-41)||(26483638-26483678)
chr8 (1-41)||(34890188-34890228)
chr8 (1-41)||(36190878-36190918)
chr8 (2-41)||(24892947-24892986)
chr8 (7-41)||(31734221-31734255)
chr8 (1-41)||(28348716-28348756)
chr8 (1-41)||(34158304-34158344)
[»] chr7 (11 HSPs)
chr7 (1-41)||(6191153-6191193)
chr7 (1-41)||(19912781-19912821)
chr7 (1-41)||(46760269-46760309)
chr7 (1-41)||(12632356-12632396)
chr7 (1-41)||(14805977-14806017)
chr7 (1-41)||(15252971-15253011)
chr7 (1-41)||(18102638-18102678)
chr7 (1-41)||(20123692-20123732)
chr7 (1-41)||(45486063-45486103)
chr7 (1-40)||(14574673-14574712)
chr7 (1-41)||(37767031-37767071)
[»] chr6 (6 HSPs)
chr6 (1-41)||(11082258-11082298)
chr6 (1-41)||(21542526-21542566)
chr6 (1-41)||(35129067-35129107)
chr6 (1-41)||(17751757-17751797)
chr6 (1-41)||(34177654-34177694)
chr6 (5-41)||(3095737-3095773)
[»] chr5 (12 HSPs)
chr5 (1-41)||(6686493-6686533)
chr5 (1-41)||(42273755-42273795)
chr5 (1-41)||(43589975-43590015)
chr5 (1-41)||(12729897-12729937)
chr5 (1-41)||(12792799-12792839)
chr5 (1-41)||(20039210-20039250)
chr5 (1-41)||(20644122-20644162)
chr5 (1-41)||(32019929-32019969)
chr5 (1-41)||(34425438-34425478)
chr5 (1-37)||(37522602-37522638)
chr5 (1-37)||(37562774-37562810)
chr5 (1-41)||(23233519-23233559)
[»] chr4 (20 HSPs)
chr4 (1-41)||(2229353-2229393)
chr4 (1-41)||(4058821-4058861)
chr4 (1-41)||(20281697-20281737)
chr4 (1-41)||(39078262-39078302)
chr4 (1-41)||(47867985-47868025)
chr4 (1-41)||(7654723-7654763)
chr4 (1-37)||(12002639-12002675)
chr4 (1-41)||(16473854-16473894)
chr4 (1-41)||(16604852-16604892)
chr4 (1-41)||(26916431-26916471)
chr4 (1-41)||(29203612-29203652)
chr4 (1-41)||(32280009-32280049)
chr4 (1-41)||(41414617-41414657)
chr4 (2-41)||(55580776-55580815)
chr4 (1-41)||(14332866-14332906)
chr4 (1-41)||(24940471-24940511)
chr4 (1-41)||(28669007-28669047)
chr4 (1-41)||(35310748-35310788)
chr4 (1-41)||(50080462-50080502)
chr4 (1-41)||(56318076-56318116)
[»] chr3 (17 HSPs)
chr3 (1-41)||(30189683-30189723)
chr3 (2-41)||(53270347-53270386)
chr3 (1-41)||(11054283-11054323)
chr3 (1-41)||(14752180-14752220)
chr3 (1-37)||(35963268-35963304)
chr3 (1-41)||(41476308-41476348)
chr3 (1-41)||(46711630-46711670)
chr3 (7-41)||(6438195-6438229)
chr3 (1-38)||(37042389-37042426)
chr3 (1-41)||(9264663-9264703)
chr3 (1-41)||(23910485-23910525)
chr3 (1-37)||(26208130-26208166)
chr3 (1-41)||(29235299-29235339)
chr3 (1-41)||(31837031-31837071)
chr3 (1-41)||(37075072-37075112)
chr3 (1-41)||(50651009-50651049)
chr3 (1-41)||(54464868-54464908)
[»] chr2 (12 HSPs)
chr2 (1-41)||(28599160-28599200)
chr2 (1-41)||(35517231-35517271)
chr2 (1-41)||(12938350-12938390)
chr2 (1-37)||(35115815-35115851)
chr2 (1-41)||(41528364-41528404)
chr2 (1-41)||(45085365-45085405)
chr2 (1-40)||(6110211-6110250)
chr2 (1-41)||(9864730-9864771)
chr2 (1-41)||(3201434-3201474)
chr2 (1-41)||(11617132-11617172)
chr2 (1-41)||(19264208-19264248)
chr2 (1-37)||(35023010-35023046)
[»] scaffold0300 (1 HSPs)
scaffold0300 (1-41)||(586-626)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-41)||(78065-78105)
[»] scaffold0774 (1 HSPs)
scaffold0774 (7-41)||(3447-3481)
[»] scaffold0442 (1 HSPs)
scaffold0442 (1-41)||(10153-10193)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-41)||(44784-44824)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 32742363 - 32742496
Alignment:
Q  148 ctacgcattcaactttttaaaagtcaataccgttaaataaaatttaatttttcatcttatgtttacgcaggcagaaacacatcatagttcatctgtgtcc 247  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32742363 ctacgcaatcaactttttaaaagtcaataccgttaaataaaatttaatttttcatcttatgtttacgcaggcagaaacacatcatagttcatctgtgtcc 32742462  T
Q  248 atgtcctttgtgattaatccagatatgatgagta 281  Q
    ||||||||||||||||||||||||||||||||||    
T  32742463 atgtcctttgtgattaatccagatatgatgagta 32742496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11241175 - 11241135
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  11241175 aaaacataagaatttggagtatagttttttgtgttttcttt 11241135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13136567 - 13136607
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  13136567 aaaacataagaatttggagtatagttttttgtgttttcttt 13136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24190617 - 24190577
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  24190617 aaaacataagaatttggagtatagttttttgtgttttcttt 24190577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 52985078 - 52985041
Alignment:
Q  4 acataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||| |||||||||||||||||||    
T  52985078 acataagaatttggagtatagttttttgtgttttcttt 52985041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2126186 - 2126146
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  2126186 aaaacataagaatttggaatatagttttttgtgttttcttt 2126146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6786986 - 6786946
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  6786986 aaaacatgagaatttggagtatagttttttgtgttttcttt 6786946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15959653 - 15959693
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  15959653 aaaacataagaatttggagtataattttttgtgttttcttt 15959693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32624018 - 32624058
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  32624018 aaaacataagaatttggagtgtagttttttgtgttttcttt 32624058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33369698 - 33369658
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  33369698 aaaacataaaaatttggagtatagttttttgtgttttcttt 33369658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35691541 - 35691501
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  35691541 aaaacataagaatttggagtataattttttgtgttttcttt 35691501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39555599 - 39555639
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  39555599 aaaacataagaatttggagtataggtttttgtgttttcttt 39555639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39932585 - 39932621
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  39932585 aaaacataagaatttggagtatagttttttgtgtttt 39932621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46543130 - 46543090
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  46543130 aaaacataaaaatttggagtatagttttttgtgttttcttt 46543090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 12448985 - 12449020
Alignment:
Q  6 ataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| |||||||||||||||||||    
T  12448985 ataagaatttggagtatagttttttgtgttttcttt 12449020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4672979 - 4672939
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||| |||||||||||||||| |||||||||| ||||||||    
T  4672979 aaaatataagaatttggagtatagttttttgtattttcttt 4672939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6785603 - 6785564
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  6785603 aaaacataagaatt-ggagtatagttttttgtgttttcttt 6785564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28016759 - 28016799
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| ||||||| |||||||||||    
T  28016759 aaaacataagaatttagagtatagtttttggtgttttcttt 28016799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 32742219 - 32742255
Alignment:
Q  5 cataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  32742219 cataagaattttgagtatagttttttgtgttttcttt 32742255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40718826 - 40718786
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
T  40718826 aaaatataaaaatttggagtatagttttttgtgttttcttt 40718786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8709800 - 8709840
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  8709800 aaaacataagaatttggagtatagttttttgtgttttcttt 8709840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13143959 - 13143999
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  13143959 aaaacataagaatttggagtatagttttttgtgttttcttt 13143999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30575848 - 30575888
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  30575848 aaaacataaaaatttggagtaaagttttttgtgttttcttt 30575888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43216361 - 43216401
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  43216361 aaaacataagaatttggagtatagttttttgtgttttcttt 43216401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7022417 - 7022457
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  7022417 aaaacataaaaatttggagtatagttttttgtgttttcttt 7022457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7858674 - 7858638
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  7858674 aaaacataagaatttggagtatagttttttgtgtttt 7858638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15824651 - 15824691
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  15824651 aaaacataagaatttgaagtatagttttttgtgttttcttt 15824691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26483678 - 26483638
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  26483678 aaaacataagaatttgaagtatagttttttgtgttttcttt 26483638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34890188 - 34890228
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  34890188 aaaacataagaatttggagtataattttttgtgttttcttt 34890228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36190918 - 36190878
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  36190918 aaaacataagaatttagagtatagttttttgtgttttcttt 36190878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 24892986 - 24892947
Alignment:
Q  2 aaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  24892986 aaacataagaatttagagtatagttttttgtgttttcttt 24892947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 31734255 - 31734221
Alignment:
Q  7 taagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| |||||||||||||||||||    
T  31734255 taagaatttggagtatagttttttgtgttttcttt 31734221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28348756 - 28348716
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| ||| |||||| ||||||||    
T  28348756 aaaacataagaatttggagtatagtattttgtattttcttt 28348716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34158304 - 34158344
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||| ||||||| ||||| |||||||||||||    
T  34158304 aaaacataagaatctggagtatagtttgttgtgttttcttt 34158344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6191193 - 6191153
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6191193 aaaacataagaatttggagtatagttttttgtgttttcttt 6191153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19912781 - 19912821
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  19912781 aaaacataagaatttggagtatagttttttgtgttttcttt 19912821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46760269 - 46760309
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  46760269 aaaacataagaatttggagtatagttttttgtgttttcttt 46760309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12632356 - 12632396
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  12632356 aaaacataagaatttggagtatagttttttatgttttcttt 12632396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14806017 - 14805977
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  14806017 aaaacataagaatttggagtatagttttttgtattttcttt 14805977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15253011 - 15252971
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  15253011 aaaacataagaatttggagtatagttttttgtattttcttt 15252971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18102678 - 18102638
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  18102678 aaaacataagaatttggagtataattttttgtgttttcttt 18102638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20123692 - 20123732
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  20123692 aaaacataagaatttggagtatagttttttgtgtattcttt 20123732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45486103 - 45486063
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  45486103 aaaacataaaaatttggagtatagttttttgtgttttcttt 45486063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14574712 - 14574673
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttctt 40  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  14574712 aaaatataagaatttggagtatagttttttgtgttttctt 14574673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37767031 - 37767071
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||| | ||||||||||| |||||||||||||||||||    
T  37767031 aaaacatgataatttggagtatagttttttgtgttttcttt 37767071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11082258 - 11082298
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  11082258 aaaacataagaatttggagtatagttttttgtgttttcttt 11082298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21542566 - 21542526
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  21542566 aaaacataagaatttggagtatagttttttgtgttttcttt 21542526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35129067 - 35129107
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  35129067 aaaacataagaatttggagtatagttttttgtgttttcttt 35129107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17751757 - 17751797
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  17751757 aaaatataagaatttggagtatagttttttgtgttttcttt 17751797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34177654 - 34177694
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  34177654 aaaacataagaatttggaatatagttttttgtgttttcttt 34177694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 3095737 - 3095773
Alignment:
Q  5 cataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  3095737 cataaaaatttggagtatagttttttgtgttttcttt 3095773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6686533 - 6686493
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6686533 aaaacataagaatttggagtatagttttttgtgttttcttt 6686493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42273795 - 42273755
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  42273795 aaaacataagaatttggagtatagttttttgtgttttcttt 42273755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43589975 - 43590015
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  43589975 aaaacataagaatttggagtatagttttttgtgttttcttt 43590015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12729897 - 12729937
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  12729897 aaaacataagaaattggagtatagttttttgtgttttcttt 12729937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12792799 - 12792839
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  12792799 aaaacataagaaattggagtatagttttttgtgttttcttt 12792839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20039250 - 20039210
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  20039250 aaaacataagaatttggagtataattttttgtgttttcttt 20039210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20644162 - 20644122
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  20644162 aaaacataagaatttggagtataattttttgtgttttcttt 20644122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32019969 - 32019929
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  32019969 aaaacataagaatttggagtatagttttctgtgttttcttt 32019929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34425478 - 34425438
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  34425478 aaaacataagaatttgaagtatagttttttgtgttttcttt 34425438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37522602 - 37522638
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  37522602 aaaacataagaatttggagtatagttttttgtgtttt 37522638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37562774 - 37562810
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  37562774 aaaacataagaatttggagtatagttttttgtgtttt 37562810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23233559 - 23233519
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||  ||| |||||||||||||||||||    
T  23233559 aaaacataagaatttgacgtatagttttttgtgttttcttt 23233519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2229393 - 2229353
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  2229393 aaaacataagaatttggagtatagttttttgtgttttcttt 2229353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4058861 - 4058821
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  4058861 aaaacataagaatttggagtatagttttttgtgttttcttt 4058821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20281737 - 20281697
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  20281737 aaaacataagaatttggagtatagttttttgtgttttcttt 20281697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39078302 - 39078262
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  39078302 aaaacataagaatttggagtatagttttttgtgttttcttt 39078262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47868025 - 47867985
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  47868025 aaaacataagaatttggagtatagttttttgtgttttcttt 47867985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7654763 - 7654723
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  7654763 aaaacataaaaatttggagtatagttttttgtgttttcttt 7654723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12002639 - 12002675
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  12002639 aaaacataagaatttggagtatagttttttgtgtttt 12002675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16473894 - 16473854
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  16473894 aaaatataagaatttggagtatagttttttgtgttttcttt 16473854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16604852 - 16604892
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  16604852 aaaacataagaatttagagtatagttttttgtgttttcttt 16604892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26916471 - 26916431
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  26916471 aaaacataagaatttggagtatggttttttgtgttttcttt 26916431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29203652 - 29203612
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  29203652 aaaacataagaatttggagtataattttttgtgttttcttt 29203612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32280009 - 32280049
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  32280009 aaaacataagaatttggagtataattttttgtgttttcttt 32280049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41414617 - 41414657
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  41414617 aaaacataagaatatggagtatagttttttgtgttttcttt 41414657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 55580815 - 55580776
Alignment:
Q  2 aaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  55580815 aaacataagaatttggagtatagttttttttgttttcttt 55580776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14332906 - 14332866
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||| ||  ||||||||||||||||||    
T  14332906 aaaacataagaatttggaatatggttttttgtgttttcttt 14332866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24940511 - 24940471
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||| ||||||||||||||| |||||||||| ||||||||    
T  24940511 aaaacgtaagaatttggagtatagttttttgtattttcttt 24940471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28669007 - 28669047
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||  |||| |||||||||||||||||||    
T  28669007 aaaacataagaatttaaagtatagttttttgtgttttcttt 28669047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35310748 - 35310788
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| || | |||||||||||||||||||    
T  35310748 aaaacataagaatttgtagcatagttttttgtgttttcttt 35310788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50080462 - 50080502
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  50080462 aaaacataagaattttgagtataattttttgtgttttcttt 50080502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 56318076 - 56318116
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| |||||  ||||||||||||||||||    
T  56318076 aaaacataagaatttagagtatggttttttgtgttttcttt 56318116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30189723 - 30189683
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  30189723 aaaacataagaatttggagtatagttttttgtgttttcttt 30189683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 53270386 - 53270347
Alignment:
Q  2 aaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  53270386 aaacataagaatttggagtatagttttttgtgttttcttt 53270347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11054283 - 11054323
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  11054283 aaaatataagaatttggagtatagttttttgtgttttcttt 11054323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14752180 - 14752220
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  14752180 aaaacataagaatttggagtataattttttgtgttttcttt 14752220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35963304 - 35963268
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  35963304 aaaacataagaatttggagtatagttttttgtgtttt 35963268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41476308 - 41476348
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  41476308 aaaacataaaaatttggagtatagttttttgtgttttcttt 41476348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46711630 - 46711670
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  46711630 aaaacataagaatttggagtataattttttgtgttttcttt 46711670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 6438229 - 6438195
Alignment:
Q  7 taagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| |||||||||||||||||||    
T  6438229 taagaatttggagtatagttttttgtgttttcttt 6438195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37042389 - 37042426
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttc 38  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  37042389 aaaacataaaaatttggagtatagttttttgtgttttc 37042426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9264703 - 9264663
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||| |||||| ||||| |||||||||||||||||||    
T  9264703 aaaacatatgaattttgagtatagttttttgtgttttcttt 9264663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23910485 - 23910525
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| || ||||||||||||||||    
T  23910485 aaaacataagaatttagagtatagctttttgtgttttcttt 23910525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26208166 - 26208130
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  26208166 aaaacataagaatttagagtatagttttttgtgtttt 26208130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29235339 - 29235299
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| |||||||||| ||||||||    
T  29235339 aaaacataagaatttagagtatagttttttgtattttcttt 29235299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31837071 - 31837031
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||| |||||||| |||||||||| ||||||||    
T  31837071 aaaacataagaagttggagtatagttttttgtattttcttt 31837031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37075112 - 37075072
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| |||| | |||||||||||||||||    
T  37075112 aaaacataagaatttgaagtataattttttgtgttttcttt 37075072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50651009 - 50651049
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  50651009 aaaacataagaatttgaaatatagttttttgtgttttcttt 50651049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 54464868 - 54464908
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| |||| | |||||||||||||||||    
T  54464868 aaaacataagaatttgaagtataattttttgtgttttcttt 54464908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28599160 - 28599200
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  28599160 aaaacataagaatttggagtatagttttttgtgttttcttt 28599200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35517271 - 35517231
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  35517271 aaaacataagaatttggagtatagttttttgtgttttcttt 35517231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12938390 - 12938350
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  12938390 aaaacataagaatttggagtatagttttttgtgctttcttt 12938350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35115815 - 35115851
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  35115815 aaaacataagaatttggagtatagttttttgtgtttt 35115851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41528404 - 41528364
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  41528404 aaaacataagaatttgaagtatagttttttgtgttttcttt 41528364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45085405 - 45085365
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  45085405 aaaacataagaatttggagtatagttttttgtattttcttt 45085365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6110211 - 6110250
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttctt 40  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  6110211 aaaacataagaatttggagtatagctttttgtgttttctt 6110250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9864730 - 9864771
Alignment:
Q  1 aaaacataagaatttggagtaaag-ttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  9864730 aaaacataagaatttggagtatagtttttttgtgttttcttt 9864771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3201474 - 3201434
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||  |||| |||||||||||||||||||    
T  3201474 aaaacataagaatttaaagtatagttttttgtgttttcttt 3201434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11617172 - 11617132
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| ||||||| || ||||||||    
T  11617172 aaaacataagaatttggagtatagtttttggtattttcttt 11617132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19264248 - 19264208
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  19264248 aaaacataagaatttagagtataattttttgtgttttcttt 19264208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35023046 - 35023010
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgtttt 37  Q
    ||||||||||||||||||||| | |||||||||||||    
T  35023046 aaaacataagaatttggagtataattttttgtgtttt 35023010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 586 - 626
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  586 aaaacataagaatttggagtatagttttatgtgttttcttt 626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 78105 - 78065
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  78105 aaaacataagaatttagagtatagttttttgtgttttcttt 78065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 3447 - 3481
Alignment:
Q  7 taagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||||||||| |||||||||||||||||||    
T  3447 taagaatttggagtatagttttttgtgttttcttt 3481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10193 - 10153
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    |||||||||||||||||| |  |||||||||||||||||||    
T  10193 aaaacataagaatttggaatgtagttttttgtgttttcttt 10153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44784 - 44824
Alignment:
Q  1 aaaacataagaatttggagtaaagttttttgtgttttcttt 41  Q
    ||||||||| ||||||||||| | |||||||||||||||||    
T  44784 aaaacataataatttggagtatatttttttgtgttttcttt 44824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University