View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_high_15 (Length: 263)
Name: NF18943_high_15
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 49134639 - 49134407
Alignment:
| Q |
13 |
aatatagaagatatatgttaccaagatgaagaacttaagtttactaactaattgtggtagtgtattgtgcttaccaggagaactccagctcataagaaag |
112 |
Q |
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| T |
49134639 |
aatatagaagatatatgttaccaagatgaagaacttaagtttactaactaattgtggtagtgtattgtgcttaccaggagaactccagctcataagaaag |
49134540 |
T |
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| Q |
113 |
ttgaaagtatatgaaacaacccaagctcctagccaatttatcaaaactaccaaactcccagcagttccctttacatgtataggaaagatctgcaatatgt |
212 |
Q |
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| T |
49134539 |
ttgaaagtatatgaaacaacccaagctcctagccaatttatcaaaactaccaaactcccagcagttccctttacatgtataggaaagatctgcaatatga |
49134440 |
T |
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| Q |
213 |
aaactagtattaattaaagcatttcttacatca |
245 |
Q |
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| T |
49134439 |
aaactagtattaattaaagcatttcttacatca |
49134407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 78 - 209
Target Start/End: Complemental strand, 6928299 - 6928168
Alignment:
| Q |
78 |
tgtgcttaccaggagaactccagctcataagaaagttgaaagtatatgaaacaacccaagctcctagccaatttatcaaaactaccaaactcccagcagt |
177 |
Q |
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| T |
6928299 |
tgtgcttaccaggagaactccaactcataagaaaattgaaagtatatgaaactatccaagctcctaaccacgctaccaaaactaccaaacttccagcagt |
6928200 |
T |
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| Q |
178 |
tccctttacatgtataggaaagatctgcaata |
209 |
Q |
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| T |
6928199 |
tcctttcacatttataggaaacacctgcaata |
6928168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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