View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_high_19 (Length: 239)
Name: NF18943_high_19
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 19755435 - 19755213
Alignment:
| Q |
1 |
cctccttccacttttaaccagtcaattgaccccatctttgaggacaatatgatagttgactctagtcctcccaaagatgatgaagaccgagagaaaatgc |
100 |
Q |
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| T |
19755435 |
cctccttccacttttaaccagtcaattaaccccatctttgaggacaatatgataattgactctagtcctcccaaagatgatgaagacccagagaaaatgc |
19755336 |
T |
|
| Q |
101 |
tttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtgg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |
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| T |
19755335 |
tttctgaacctcctcaagatttgaatgataaaagtgttgaagatgatcaacaacacattgatgaagaaaatgaagggggtccatctctggtcgaaagtgg |
19755236 |
T |
|
| Q |
201 |
aaaaagtaaagaacctcgtgggt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
19755235 |
aaaaagtaaagaacctcgtgggt |
19755213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 8135128 - 8135228
Alignment:
| Q |
100 |
ctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtg |
199 |
Q |
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|||||||| | | ||||||||| ||||| | |||| ||||||||||||| || |||| | |||| ||| | |||||||||||||||| |||||| ||| |
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| T |
8135128 |
ctttctgatcattctcaagattcaaatgccagaagtattgaagatgatcagcatcacactgatgaggaagacgaagggggtccatctctagtcgaaagtg |
8135227 |
T |
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| Q |
200 |
g |
200 |
Q |
| |
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|
| T |
8135228 |
g |
8135228 |
T |
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