View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_high_20 (Length: 237)
Name: NF18943_high_20
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 43900170 - 43899965
Alignment:
| Q |
17 |
atgaaaagctaaaactaagcttagactctcaacctttgccaatgtaaaaatgtatgagattttgaaaaatgtgattattattaggcgactagtgataatt |
116 |
Q |
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| T |
43900170 |
atgaaaagctaaaactaagcttagactctcaacctttgccaatgtaaaaatgtatgagattttgaaaaatgtgattattattaggcgactagtgataatt |
43900071 |
T |
|
| Q |
117 |
agttatcaattcttctcgaaatttgactggaattatgatttaatattgttggtaaatggttttcatcaattataggagatttgattcttcatagtaaata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43900070 |
agttatcaattcttctcgaaatttgactggaattatgatttaatattgttggtaaatggttttcatcaattataggagatttgattcttcatagtaaata |
43899971 |
T |
|
| Q |
217 |
tcaact |
222 |
Q |
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|||||| |
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| T |
43899970 |
tcaact |
43899965 |
T |
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