View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_high_3 (Length: 650)
Name: NF18943_high_3
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_high_3 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 32 - 635
Target Start/End: Complemental strand, 66692 - 66098
Alignment:
| Q |
32 |
atattaatgtaaagaaaaggcggtggttgtggggtgtatgggtaaccaagaggatggagaagaaggtgggctaatcaagtgatgatgataagtataaaaa |
131 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
66692 |
atatcaatgtaaagaaaaggcggtggttgtggggtgtatgggtaaccaagaggatggagaagaaggtgggctaatcaagtgatgatgataagtataaaaa |
66593 |
T |
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| Q |
132 |
actattttccaagcactaactgtggttaatgtggttaatgtgatcgttgctataactagtccaaaaaacttcccttcggtatggtaatcaatttcccaaa |
231 |
Q |
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| T |
66592 |
actattttccaagcactaaccgtggttaatgtg---------atcgttgctataactagtccaaaaaacttcccttcggtatggtaatcaatttcccaaa |
66502 |
T |
|
| Q |
232 |
acttgtctcaaactttttcgaacatatactttcaaatgnnnnnnncttattttgtagaggttgaatgagtgagatttgtaaaaggttaaaattgggtttt |
331 |
Q |
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| T |
66501 |
acttgtctcaaactttttcgaaaatatactttcaaatgaaaaaaacttattttgtagaggttgaatgagtgagatttgtaaaaggttaaaattgggtttt |
66402 |
T |
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| Q |
332 |
taatggtttgttggggtaggggcattgtaaaggtgttgggtaaattcttcgagggagagctaggcaaatttacgttgggctcaactagggccaatcttaa |
431 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
66401 |
taatggtttgttggggtaggggcattgtaaaggtgtggggtaaattcttcgagggagagctaggcaaatttaagttgggctcaactagggccaatcttaa |
66302 |
T |
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| Q |
432 |
ccatttttgggtcatctggttcccattcctgtcaaatccttttaccgatcgagtcgtaatttgtgacgggctttctttgtgtgtaaatttcgaacgggcc |
531 |
Q |
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| T |
66301 |
ccattgttgggtcatctggttcccattcctgtcaaatccttttaccgatcgagtcgtaatttgtgatgggctttctttgtgtgtaaatttcgagcgggcc |
66202 |
T |
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| Q |
532 |
aaaaatcctaatcatttttgtttgggttatgataggcacttgttaaggattcaaaagaagaaattatttgtagcaatttaaatcgtatgtcgaaattgtt |
631 |
Q |
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| T |
66201 |
accaatcctgatcatttttgtttgggttatgataggcacttgttaaggatttaaaagaagaaattatttgtagcaatttaaatcgtatgtcgaaattgtt |
66102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 32 - 635
Target Start/End: Complemental strand, 74535 - 73941
Alignment:
| Q |
32 |
atattaatgtaaagaaaaggcggtggttgtggggtgtatgggtaaccaagaggatggagaagaaggtgggctaatcaagtgatgatgataagtataaaaa |
131 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
74535 |
atatcaatgtaaagaaaaggcggtggttgtggggtgtatgggtaaccaagaggatggagaagaaggtgggctaatcaagtgatgatgataagtataaaaa |
74436 |
T |
|
| Q |
132 |
actattttccaagcactaactgtggttaatgtggttaatgtgatcgttgctataactagtccaaaaaacttcccttcggtatggtaatcaatttcccaaa |
231 |
Q |
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| T |
74435 |
actattttccaagcactaaccgtggttaatgtg---------atcgttgctataactagtccaaaaaacttcccttcggtatggtaatcaatttcccaaa |
74345 |
T |
|
| Q |
232 |
acttgtctcaaactttttcgaacatatactttcaaatgnnnnnnncttattttgtagaggttgaatgagtgagatttgtaaaaggttaaaattgggtttt |
331 |
Q |
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| T |
74344 |
acttgtctcaaactttttcgaaaatatactttcaaatgaaaaaaacttattttgtagaggttgaatgagtgagatttgtaaaaggttaaaattgggtttt |
74245 |
T |
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| Q |
332 |
taatggtttgttggggtaggggcattgtaaaggtgttgggtaaattcttcgagggagagctaggcaaatttacgttgggctcaactagggccaatcttaa |
431 |
Q |
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| T |
74244 |
taatggtttgttggggtaggggcattgtaaaggtgtggggtaaattcttcgagggagagctaggcaaatttaagttgggctcaactagggccaatcttaa |
74145 |
T |
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| Q |
432 |
ccatttttgggtcatctggttcccattcctgtcaaatccttttaccgatcgagtcgtaatttgtgacgggctttctttgtgtgtaaatttcgaacgggcc |
531 |
Q |
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| T |
74144 |
ccattgttgggtcatctggttcccattcctgtcaaatccttttaccgatcgagtcgtaatttgtgatgggctttctttgtgtgtaaatttcgagcgggcc |
74045 |
T |
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| Q |
532 |
aaaaatcctaatcatttttgtttgggttatgataggcacttgttaaggattcaaaagaagaaattatttgtagcaatttaaatcgtatgtcgaaattgtt |
631 |
Q |
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| T |
74044 |
accaatcctgatcatttttgtttgggttatgataggcacttgttaaggatttaaaagaagaaattatttgtagcaatttaaatcgtatgtcgaaattgtt |
73945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 603
Target Start/End: Complemental strand, 31375621 - 31375584
Alignment:
| Q |
566 |
ggcacttgttaaggattcaaaagaagaaattatttgta |
603 |
Q |
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| T |
31375621 |
ggcacttgttaaggattcagaagaggaaattatttgta |
31375584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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