View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18943_high_6 (Length: 470)

Name: NF18943_high_6
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18943_high_6
NF18943_high_6
[»] chr6 (3 HSPs)
chr6 (94-457)||(13306558-13306927)
chr6 (255-456)||(14596950-14597151)
chr6 (97-194)||(14597379-14597476)
[»] chr3 (3 HSPs)
chr3 (95-457)||(13786114-13786475)
chr3 (94-457)||(49282284-49282645)
chr3 (292-457)||(13786564-13786729)
[»] chr4 (4 HSPs)
chr4 (94-457)||(13935200-13935561)
chr4 (336-457)||(10397228-10397349)
chr4 (309-457)||(7284892-7285040)
chr4 (166-264)||(10397416-10397515)
[»] chr5 (1 HSPs)
chr5 (309-457)||(6839467-6839615)
[»] chr1 (1 HSPs)
chr1 (309-457)||(15999186-15999334)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 94 - 457
Target Start/End: Original strand, 13306558 - 13306927
Alignment:
Q  94 ctggtttaaatatatttttggttaattattgattggcaattggagatgcttttatttaaggattaatactttataattattgaaacacttaatattttat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13306558 ctggtttaaatatatttttggttaattattgattggcaattggagatgcttttatttaaggcttaatactttataattattgaaacacttaatattttat 13306657  T
Q  194 attgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagccgaatctactcaacaagcggctgctgagct------acccccctt 287  Q
    | ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||  |||||||||||       ||||||||    
T  13306658 aatgcaaaaaatttagctaaatgcatatctaaattactttacttattttttcagctgaatctactcaacaagtagctgctgagctccccccccccccctt 13306757  T
Q  288 acccactactaggtgcaggaaacctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatata 387  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |    
T  13306758 acccactactaggtgtaggagacctaatgccaatggtaataggagaacctctcccgtttggcttgattttaatccattacccgatgaaccagaacataca 13306857  T
Q  388 gccgcttgtaaacactgccataaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13306858 gccgcttgtaaacactgccataaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 13306927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 255 - 456
Target Start/End: Complemental strand, 14597151 - 14596950
Alignment:
Q  255 tactcaacaagcggctgctgagctaccccccttacccactactaggtgcaggaaacctaatgccaatggtaataggagaacctctcccgtttgacttgat 354  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  14597151 tactccacaagcagctgctgagctcccccccttacccactactaggtgtaggagacctaatgccaatggtaataggagaacctctcccgtttggcttgat 14597052  T
Q  355 tttaatccattacccaatgaaccaaaacatatagccgcttgtaaacactgccataaaagataccgttgtgattctaaattaaatgggacgtccaacatgt 454  Q
    |||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  14597051 tttaatccattacccaataaaccagaacctacagccgcttgtaaacactgccataaaagatgccattgtgattctaaattaaatgggacgtccaacatgt 14596952  T
Q  455 ta 456  Q
    ||    
T  14596951 ta 14596950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 14597476 - 14597379
Alignment:
Q  97 gtttaaatatatttttggttaattattgattggcaattggagatgcttttatttaaggattaatactttataattattgaaacacttaatattttata 194  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14597476 gtttaaatatatttttggttaattattgattggcaattgaagatgcttttatttaaggcttaatactttataattattgaaacacttaatattttata 14597379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 95 - 457
Target Start/End: Original strand, 13786114 - 13786475
Alignment:
Q  95 tggtttaaatatatttttggttaattattgattggcaattggagatgcttttatttaaggattaatactttataattattgaaacacttaatattttata 194  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13786114 tggtttaaatatatttttggttaattat-gattggcaattggagatgcttttatttaaggcttaatactttataattattgaaacacttaatattttata 13786212  T
Q  195 ttgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagccgaatctactcaacaagcggctgctgagctaccccccttacccact 294  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||||||    
T  13786213 atgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagctgaatctactcaacaagcagctgctgagctccccccttttcccact 13786312  T
Q  295 actaggtgcaggaaacctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccgctt 394  Q
    |||||||| | || ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | ||| || | ||||||    
T  13786313 actaggtgtaagagacctaatgccaatggtaataggagaacctcttccgtttggcttgattttaatccattacccaatgaacgagaacctacaaccgctt 13786412  T
Q  395 gtaaacactgccataaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  13786413 gtaaacactgccataaaagatatcgttgtgattctaaattaaatgggaagtccagcatgttag 13786475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 94 - 457
Target Start/End: Complemental strand, 49282645 - 49282284
Alignment:
Q  94 ctggtttaaatatatttttggttaattattgattggcaattggagatgcttttatttaaggattaatactttataattattgaaacacttaatattttat 193  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49282645 ctggtttaaatatatttttggttaattattgattgataattggagatgcttttatttaaggcttaatactttataattattgaaacacttaatattttat 49282546  T
Q  194 attgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagccgaatctactcaacaagcggctgctgagctaccccccttacccac 293  Q
    | ||||||||||||||||| ||||||||| ||||||||||||| || |||||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  49282545 aatgcaaaaaacttagctagatgcatatcagaattactttactaatcttttcagctgaatctactcaacaagcagctgctaagct-ccccccttacccac 49282447  T
Q  294 tactaggtgcaggaaacctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccgct 393  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||||| ||||||||||| ||| || |||||||    
T  49282446 tactaggtgtaggagacctaatgccaatggtaataggagaacatctctcgtttggcttgatttt-atccattatccaatgaaccagaacctacagccgct 49282348  T
Q  394 tgtaaacactgccataaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  49282347 tgtaaacactgccataaaagatatcattgtgattctaaattaaatgggacgtccaacatgttag 49282284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 13786564 - 13786729
Alignment:
Q  292 actactaggtgcaggaaacctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccg 391  Q
    ||||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  | ||| || | |||    
T  13786564 actactaggtgtaagagacctaatgccaatggtaataggagaacctctcccgtttggcttgattttaatccattacccaatgaatgagaacctacaaccg 13786663  T
Q  392 cttgtaaacactgccataaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  13786664 cttgtaaacactgccataaaagatatcgttgtgattctaaattaaatgggaagtccagcatgttag 13786729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 94 - 457
Target Start/End: Original strand, 13935200 - 13935561
Alignment:
Q  94 ctggtttaaatatatttttggttaattattgattggcaattggagatgcttttatttaaggattaatactttataattattgaaacacttaatattttat 193  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||    
T  13935200 ctggtttaaatatatttttggttaattaatgattggcgattagagatgcttttatttaaagcttaatactttataattattgaaacacttaatatttcat 13935299  T
Q  194 attgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagccgaatctactcaacaagcggctgctgagctaccccccttacccac 293  Q
    | ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| |||||||||||  |||||||||||||    
T  13935300 aatgcaaaaaacttagctaaatgcatatctgaattactttactaatcttttcagctgaatctactcaccaagcagctgctgagct--cccccttacccac 13935397  T
Q  294 tactaggtgcaggaaacctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccgct 393  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||||||     
T  13935398 tactgggtgtaggagacctaatgccaatggtaataggagaacctctcccgtttggcttgattttaatccattacccaatgaaccagaacctacagccgcg 13935497  T
Q  394 tgtaaacactgccataaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  13935498 tgtaaacactgccataaaagataccattgtgattctaaattaaatggaacgtccaacatgttag 13935561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 457
Target Start/End: Complemental strand, 10397349 - 10397228
Alignment:
Q  336 ctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccgcttgtaaacactgccataaaagataccgttgtgattctaaatta 435  Q
    ||||||| ||||||| ||||||||||   || |  |||||| | ||| || | |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  10397349 ctctcccatttgactagattttaatctcataactgatgaactagaacttacaaccgcttgtaaacactgccatgatagatatcattgtgattctaaatta 10397250  T
Q  436 aatgggacgtccaacatgttag 457  Q
    ||  |||| |||||||||||||    
T  10397249 aacaggacatccaacatgttag 10397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 7284892 - 7285040
Alignment:
Q  309 acctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccgcttgtaaacactgccat 408  Q
    ||||||||| | ||| |||||||||||||  ||  |||| || |||||||| ||  || ||||||||||| ||| || ||| ||||||||||| || |||    
T  7284892 acctaatgctagtggcaataggagaacctgccctatttggctagattttaaccctctatccaatgaaccagaacctaaagcagcttgtaaacattgtcat 7284991  T
Q  409 aaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    | | |||| |||||||||||||||  | ||||||| |||| ||||||||    
T  7284992 agacgatatcgttgtgattctaaagcacatgggacatccagcatgttag 7285040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 10397515 - 10397416
Alignment:
Q  166 ataattattgaaacacttaa-tattttatattgcaaaaaacttagctaaatgcatatctgaattactttacttattttttcagccgaatctactcaacaa 264  Q
    ||||||||||||| | |||| || |||||| ||| ||| ||| |||||||| ||||||| |||||||||||| || |||| ||  |||||||||||||||    
T  10397515 ataattattgaaatatttaaatactttataatgcgaaatactcagctaaatacatatctaaattactttactaatctttttagttgaatctactcaacaa 10397416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 309 - 457
Target Start/End: Complemental strand, 6839615 - 6839467
Alignment:
Q  309 acctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccgcttgtaaacactgccat 408  Q
    ||||||||| ||||||||||||||||||||||| |||||  | |||||||| || ||||||||||||||| ||| |||||| | ||||||||| ||||||    
T  6839615 acctaatgctaatggtaataggagaacctctcctgtttggttagattttaaccctttacccaatgaaccagaacctatagcagtttgtaaacattgccat 6839516  T
Q  409 aaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    ||| |||| || ||| ||||||||  | ||||||| || | ||||||||    
T  6839515 aaacgatatcgctgtcattctaaagcacatgggacatctagcatgttag 6839467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 457
Target Start/End: Original strand, 15999186 - 15999334
Alignment:
Q  309 acctaatgccaatggtaataggagaacctctcccgtttgacttgattttaatccattacccaatgaaccaaaacatatagccgcttgtaaacactgccat 408  Q
    ||||||||| ||||||||||||||||||||||| |||||  |  ||||||| || ||| ||||||||||| ||| | |||| ||||||||||| ||||||    
T  15999186 acctaatgctaatggtaataggagaacctctcctgtttggttacattttaaccctttatccaatgaaccagaacctgtagcagcttgtaaacattgccat 15999285  T
Q  409 aaaagataccgttgtgattctaaattaaatgggacgtccaacatgttag 457  Q
    ||| |||| |  ||| ||||||||  | ||||||| |||| ||||||||    
T  15999286 aaacgatatcactgtcattctaaagcacatgggacatccagcatgttag 15999334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University