View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_high_7 (Length: 453)
Name: NF18943_high_7
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 28920199 - 28919910
Alignment:
| Q |
11 |
cacagatcaattcatccctccaaaaactcaaacaaacatataactccaaaaacacacaagact--atttgttatatattgatcatcaaattcaatacaca |
108 |
Q |
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| T |
28920199 |
cacagatcaattcatccctccaaaaactcaaacaaacatatcactccaaaaacacacaagactctatttgttatatattgatcatcaaattcaatacaca |
28920100 |
T |
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| Q |
109 |
gatacagctttcccatctaaccttttccccaaaaaatatccccgaaaacagagatccagctcaatcatcaaattctcctacaattgaatcagagaaacaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
28920099 |
gatacagctttcccatctaaccttttccccaaaaaatatccctgaaaacagagatccagctcaagcatcaaattctcctataatcgaatcagagaaacaa |
28920000 |
T |
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| Q |
209 |
atacccccatacttcttataattacagatcaattcaaccaataaagtaagcaacaggaaaacagaacatacaagaatcaatttgttttat |
298 |
Q |
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| T |
28919999 |
atacccccatacttcttataattacagatcaattcaaccaataaagtaagcaacaggaaaacagaacatacaagaatcaatttgttttat |
28919910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 28919911 - 28919807
Alignment:
| Q |
329 |
atatcaatatcaaattcaaaaatatcccacctaacannnnnnnncactagaaaattcccccaaaacataaaatcccacctcaattcacaaattctaacat |
428 |
Q |
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| T |
28919911 |
atatcaatatcaaattcaataatatcccacctaacattttttt-cactagaaaattcccccaaaacataaaatcccacctcaattcacaaattctaacat |
28919813 |
T |
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| Q |
429 |
aaacta |
434 |
Q |
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|||||| |
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| T |
28919812 |
aaacta |
28919807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 28895941 - 28895905
Alignment:
| Q |
285 |
tcaatttgttttattttgaccatacatctcaagaaaa |
321 |
Q |
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| T |
28895941 |
tcaatttgttttattttgaccatacatcacaggaaaa |
28895905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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