View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18943_high_9 (Length: 410)
Name: NF18943_high_9
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 19157999 - 19158382
Alignment:
| Q |
10 |
attatactcataacagacaagtgagaatcatttacctttattttcaagtcatttctgaaacttggggaaatccttcttcatgtgtgctttctttttacaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
19157999 |
attagactcataacagacaagtgagattgatttacctttgttttcaagccatttctgaaacttggggcaatccttcttcatgtgtcccttctttttacaa |
19158098 |
T |
|
| Q |
110 |
aataaacatttggattctttcttaattccaccttgagctggtatttgtcctttccccttgtgtttggcttgattcatgttctttctttcagttgcaacaa |
209 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
19158099 |
aagaaacacttggattctttcttaattccaccttgaggtggtattttgcctttccccttatgtttcgcttgattcatattctttctttcagttgcaacaa |
19158198 |
T |
|
| Q |
210 |
aaatactctcacttttttccatagtcaaccttccttcttcttgaacacacatggtcaggagttcattaattgaccatttgttcttatatgtgtcataaga |
309 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
19158199 |
aaacactctcacttttttccatagtcaaccttccttcttcttgaacacacatggtcaggagttcattaattgaccatttgtccttatgtgtgttataaga |
19158298 |
T |
|
| Q |
310 |
attcttgaaaggtccatattcaggtggaagagagttcagaatgtagtgcacaaggaaagaatcagatatatcaacctcaagagt |
393 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
19158299 |
aatcttgaaaggtccatattcaggtggaagagtgttcagaatgtagtgcacaagaaaagaatcagacatatcaacctcaagagt |
19158382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 7452922 - 7452541
Alignment:
| Q |
10 |
attatactcataacagacaagtgagaatcatttacctttattttcaagtcatttctgaaacttggggaaatccttcttcatgtgtgctttctttttacaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||| | |||||||||||| |
|
|
| T |
7452922 |
attagactcataacagacaagtgagattgatttacctttgttttcaagccatttctgaaacttggggcaatacttcttcatgtgtcccttctttttacaa |
7452823 |
T |
|
| Q |
110 |
aataaacatttggattctttcttaattccaccttgagctggtatttgtcctttccccttgtgtttggcttgattcatgttctttctttcagttgcaacaa |
209 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
7452822 |
aagaaacacttggattctttcttaattccaccttgaggtggtattttgcctttccccttttgtttcgcttgattcatgttctttctttcagttacaacaa |
7452723 |
T |
|
| Q |
210 |
aaatactctcacttttttccatagtcaaccttccttcttcttgaacacacatggtcaggagttcattaattgaccatttgttcttatatgtgtcataaga |
309 |
Q |
| |
|
||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
7452722 |
aaacactc--atttttttccatagtcaaccttccttcttctcgaacacacatggtcaggagttcattaattgaccatttgtccttatgtgtgttataaga |
7452625 |
T |
|
| Q |
310 |
attcttgaaaggtccatattcaggtggaagagagttcagaatgtagtgcacaaggaaagaatcagatatatcaacctcaagagt |
393 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
7452624 |
aatcttgaaaggtccatattcaggtggaagagagttcagaatgtagtgcacaagaaaagaatcagacatatcaacctcaagagt |
7452541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 390
Target Start/End: Original strand, 36836543 - 36836698
Alignment:
| Q |
235 |
caaccttccttcttcttgaacacacatggtcaggagttcattaattgaccatttgttcttatatgtgtcataagaattcttgaaaggtccatattcaggt |
334 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||| |||||| | || | ||| |||| |||| |
|
|
| T |
36836543 |
caacctttcttcttcttgaacacacatggtcaagagttcattaattgaccatttttctttatgtgtgttgtaagaaatttttagtggttcatacggaggt |
36836642 |
T |
|
| Q |
335 |
ggaagagagttcagaatgtagtgcacaaggaaagaatcagatatatcaacctcaag |
390 |
Q |
| |
|
||||| | |||| ||| || || ||||||||||| ||||| || ||||||||||| |
|
|
| T |
36836643 |
ggaagggtattcaaaatataatgaacaaggaaagattcagacatgtcaacctcaag |
36836698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 393
Target Start/End: Complemental strand, 18477166 - 18476784
Alignment:
| Q |
10 |
attatactcataacagacaagtgagaatcatttacctttattttcaagtcatttctgaaacttggggaaatccttcttcatgtgtgctttctttttacaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||| || |
|
|
| T |
18477166 |
attagactcataacagacaagtgagattgatttacctttgttttcaagccatttctgaaacttggggcaatccttcttcatgtgtcccttctttttagaa |
18477067 |
T |
|
| Q |
110 |
aataaacatttggattctttcttaattccaccttgagctggtatttgtcctttccccttgtgtttggcttgattcatgttctttctttcagttgcaacaa |
209 |
Q |
| |
|
|| ||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18477066 |
aagaaacacttgtattctttcttaattccaccttgaggtggtattttgcctttccccttatgtttcgcttgattcatgttctttctttcagttgcaacaa |
18476967 |
T |
|
| Q |
210 |
aaatactctcacttttttccatagtcaaccttccttcttcttgaacacacatggtcaggagttcattaattgaccatttgttcttatatgtgtcataaga |
309 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
18476966 |
aaacactctcacttttttccatagtcaaccttccttcttcttgaacacacatggtcaggagttctttaattgaccatttgtccttatgtgtgttataaga |
18476867 |
T |
|
| Q |
310 |
attcttgaaaggtccatattcaggtggaagagagttcagaatgtagtgcacaaggaaagaatcagatatatcaacctcaagagt |
393 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||| | || || ||||||| ||| ||||||||||||||||| |
|
|
| T |
18476866 |
aatcttgaaaggtccatattcaggtggaagagtgttcagaatgtag-gtacgagaaaagaattagacatatcaacctcaagagt |
18476784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 772569 - 772521
Alignment:
| Q |
234 |
tcaaccttccttcttcttgaacacacatggtcaggagttcattaattga |
282 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
772569 |
tcaacctttcttcttcttgaacacacatggtcaagagttcattaattga |
772521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 773642 - 773683
Alignment:
| Q |
24 |
agacaagtgagaatcatttacctttattttcaagtcatttct |
65 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
773642 |
agacaaatgagattgatttacctttattttcaagtcatttct |
773683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 51981766 - 51981824
Alignment:
| Q |
236 |
aaccttccttcttcttgaacacacatggtcaggagttcattaattgaccatttgttctt |
294 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
51981766 |
aacctttcttctttttgaacacacagggtcaagagttcattaattgaccattttttctt |
51981824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 390
Target Start/End: Complemental strand, 7925911 - 7925746
Alignment:
| Q |
225 |
tttccatagtcaaccttccttcttcttgaacacacatggtcaggagttcattaattgaccatttgttcttatatgtgtcataagaattcttgaaaggtcc |
324 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||||||||||| ||||||||| | ||||| || | |||||||||| |||||| || || ||| | |
|
|
| T |
7925911 |
tttccatcgccaacctttcttcttcttaaacacacatggtcaaaagttcattattcgaccaattttctttatatgtgttgtaagaaaattttaatggttc |
7925812 |
T |
|
| Q |
325 |
atattcaggtggaagagagttcagaatgtagtgcacaaggaaagaatcagatatatcaacctcaag |
390 |
Q |
| |
|
|||| ||||||||| | ||||| ||| || |||| ||||||| | ||||| ||||||||| |||| |
|
|
| T |
7925811 |
atatggaggtggaagggtgttcaaaatataatgcaaaaggaaatattcagacatatcaaccgcaag |
7925746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University