View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_low_14 (Length: 271)
Name: NF18943_low_14
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 35428835 - 35429088
Alignment:
| Q |
1 |
ttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatttggacaaaacattatt |
100 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35428835 |
ttaatactttcctgatcgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatttggacaaaacattatt |
35428934 |
T |
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| Q |
101 |
agggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattacttttctacttctacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35428935 |
agggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaatcatcaccaaaaggcaaattacttttctacttctacct |
35429034 |
T |
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| Q |
201 |
catacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429035 |
catacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacct |
35429088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 35419702 - 35419949
Alignment:
| Q |
1 |
ttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatttggacaaaacattatt |
100 |
Q |
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|||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35419702 |
ttaatacttccctgatagaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatttggacaaaacattatt |
35419801 |
T |
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| Q |
101 |
agggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattacttttctacttctacct |
200 |
Q |
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|||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||||||| ||||| | | || |
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| T |
35419802 |
agggttat-aacctacttaaactcttccaaaattttgcctataaatgcattgtatagcaaaatcatgagcaaaaggcaaattac--ttctaagtgtgtct |
35419898 |
T |
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| Q |
201 |
catacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacct |
254 |
Q |
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| | | ||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35419899 |
ccaa--tcctt-aaagcttgatcactcatacatggagtcctcctcctttgacct |
35419949 |
T |
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