View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_low_15 (Length: 266)
Name: NF18943_low_15
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 43539221 - 43539470
Alignment:
| Q |
1 |
tgatcatgctgtttctcctggtgctaggatttttcttgtccatgtttctcctccaattacattgattcctacgccaggtatcacctaatcttgggtaact |
100 |
Q |
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| T |
43539221 |
tgatcatgctgtttctcctggtgctaggatttttcttgtccatgtttctcctccaattacattgattcctacgccaggtatcacctaatcttgggtaact |
43539320 |
T |
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| Q |
101 |
agtgataagacttggnnnnnnnnnttatatagagcaacacccggaggccatgaaacacgaacaccgacacatataattacattgaaattaaattatgtga |
200 |
Q |
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| T |
43539321 |
agtgataagacttgg-aaaaaaaattatatagagcaatacccgtaggccatgaaacacgaacaccgacacatatagttacattgaaattgaattatgtga |
43539419 |
T |
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| Q |
201 |
ttttcttaaattagttatcggtgattgcgtgttggtgtccaatatccttgt |
251 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43539420 |
tttttttaaattagttatcggtgactgcgtgttggtgtccaatatccttgt |
43539470 |
T |
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