View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_low_18 (Length: 248)
Name: NF18943_low_18
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 7962694 - 7962596
Alignment:
| Q |
83 |
accgtctcaatctagaagatttaatacttggtacatatagatgggtaggaggtcaactaatcaaagatcatcgtgaggcgacatttgcattgaaggaca |
181 |
Q |
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| T |
7962694 |
accgtctcaatctagaagatttaatacttggtaaatatagatgggtaggaggtcaacaaatcaaagattatcgtgagacgacgactgcattgcaggaca |
7962596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 7973552 - 7973449
Alignment:
| Q |
17 |
cataggctgtgcatgtgaagaagtttacacatgtgatattcttgttcatgtttccttgtttaaagaaccgtctcaatctagaagatttaatacttggtac |
116 |
Q |
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| T |
7973552 |
cataggttgtgcatgtgaagaagtttacacctctgatactcctgttcttgtttccttgtttaaag-accgtctcaatccagaatctgtaacacttggtaa |
7973454 |
T |
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| Q |
117 |
atata |
121 |
Q |
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| T |
7973453 |
atata |
7973449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 7962415 - 7962370
Alignment:
| Q |
187 |
ttggggtgaaatcattgaatttagtttattccagagaatactctct |
232 |
Q |
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| T |
7962415 |
ttggggtgaaatcattgaatttggtttattccagagaatactctct |
7962370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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