View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18943_low_2 (Length: 696)
Name: NF18943_low_2
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 172 - 380
Target Start/End: Complemental strand, 55170273 - 55170065
Alignment:
| Q |
172 |
ttaacagacaatcggtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
271 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55170273 |
ttaacagacaatctgtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
55170174 |
T |
|
| Q |
272 |
ctaaagttggtgtttgtcaatgacaacataataatgttaccaaactccatcaaatgatagccttcattattcatcaacttttaaccaaatattttggaaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55170173 |
ctaaagttggtgtttgtcaatgacaaaacaataatgttaccaaactccatcaaatgatagccttcattattcatcaacttttaaccaaatattttggaaa |
55170074 |
T |
|
| Q |
372 |
cggttcagg |
380 |
Q |
| |
|
||||||||| |
|
|
| T |
55170073 |
cggttcagg |
55170065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 55170504 - 55170346
Alignment:
| Q |
10 |
attattctgaaatgaaagaaaatcaagtgcataagaagnnnnnnnctggattcgaatca--atgtaaacacggcaatcatagattgtcacagttgtaacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
55170504 |
attattctgaaatgaaagaaaatcaagtgcataagaagaaaaaaactggattcgaatcacaatgtaaacacggcaatcatagattgtcccagttgtaacc |
55170405 |
T |
|
| Q |
108 |
tttttgtacttaa--aaaatactatccaaaattatgaatatttgtttgtaaggaccatt |
164 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55170404 |
tttttgtacttaaaaaaaatactatccaaaattctgaatatttgtttgtaaggaccatt |
55170346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University