View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18943_low_24 (Length: 227)

Name: NF18943_low_24
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18943_low_24
NF18943_low_24
[»] chr1 (8 HSPs)
chr1 (7-227)||(1828876-1829096)
chr1 (53-94)||(7472288-7472329)
chr1 (6-47)||(26946548-26946589)
chr1 (53-94)||(27976572-27976613)
chr1 (53-94)||(49888744-49888785)
chr1 (58-94)||(23445316-23445352)
chr1 (31-95)||(36070202-36070269)
chr1 (31-88)||(42391318-42391377)
[»] chr4 (4 HSPs)
chr4 (6-95)||(49004023-49004113)
chr4 (20-94)||(17884009-17884086)
chr4 (60-93)||(2465972-2466005)
chr4 (58-94)||(6466098-6466134)
[»] chr6 (6 HSPs)
chr6 (53-94)||(24626272-24626313)
chr6 (47-94)||(35099008-35099055)
chr6 (36-94)||(2735026-2735087)
chr6 (58-94)||(4006696-4006732)
chr6 (53-93)||(6909925-6909965)
chr6 (58-94)||(31776327-31776363)
[»] chr3 (5 HSPs)
chr3 (63-94)||(22203417-22203448)
chr3 (53-94)||(21367644-21367685)
chr3 (33-94)||(37788814-37788878)
chr3 (25-93)||(32095244-32095315)
chr3 (31-94)||(46886744-46886808)
[»] chr7 (2 HSPs)
chr7 (13-87)||(40009404-40009481)
chr7 (61-93)||(44917589-44917621)
[»] chr2 (3 HSPs)
chr2 (65-95)||(1977091-1977121)
chr2 (63-95)||(39621938-39621970)
chr2 (58-94)||(40889490-40889526)
[»] chr8 (2 HSPs)
chr8 (61-94)||(926473-926506)
chr8 (58-90)||(3269676-3269708)
[»] chr5 (4 HSPs)
chr5 (61-94)||(17368661-17368694)
chr5 (58-94)||(6587159-6587195)
chr5 (58-94)||(10272483-10272519)
chr5 (58-94)||(18857452-18857488)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 1829096 - 1828876
Alignment:
Q  7 atgacaagcgcttatgtgtaagtcatttttataacaaaagaaaaatagtttaattgtttttgtataatctataagttgttttcataagtacgtatttgaa 106  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  1829096 atgataagcgcttatgtataagtcatttttataacaaaagaaaaatagtttaattgttttagtataatctataagttgttttgataagtacgtatttgaa 1828997  T
Q  107 tgcatgaccaaaattgtacgtaagttgattgttgatgattccttcctagaagatgagccatgtatcatatctatcaatgtaataatactgagagaatgtg 206  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  1828996 tgcatgaccaaaattgtacgtaaatttattgttgatgattccttcctagaagatgagccatgtatcatatctatcaatgtaataatgcagagagaatgtg 1828897  T
Q  207 taggtaaccctaacctaattc 227  Q
    |||||||||||||||||||||    
T  1828896 taggtaaccctaacctaattc 1828876  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 7472288 - 7472329
Alignment:
Q  53 agtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||| |||||||||||||||||||||||| ||||| ||||||    
T  7472288 agttaaattgtttttgtataatctataagctgtttccataag 7472329  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 26946589 - 26946548
Alignment:
Q  6 aatgacaagcgcttatgtgtaagtcatttttataacaaaaga 47  Q
    ||||| |||||||||||||||| |||||| ||||||||||||    
T  26946589 aatgataagcgcttatgtgtaaatcatttctataacaaaaga 26946548  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 27976572 - 27976613
Alignment:
Q  53 agtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||| |||||||||||||||  ||||||||||||||||||||    
T  27976572 agttaaattgtttttgtatatgctataagttgttttcataag 27976613  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 49888744 - 49888785
Alignment:
Q  53 agtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||||||||||||| |||||| |||| |||||||||||||||    
T  49888744 agtttaattgttttcgtataagctattagttgttttcataag 49888785  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 23445316 - 23445352
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    |||||||||||||||| | ||||||||||||||||||    
T  23445316 aattgtttttgtataagccataagttgttttcataag 23445352  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 36070202 - 36070269
Alignment:
Q  31 atttttataacaaaaga-aaaata--gtttaattgtttttgtataatctataagttgttttcataagt 95  Q
    ||||||||||||||||| ||||||  ||| |||||| || | |||| |||||||||||||||||||||    
T  36070202 atttttataacaaaagataaaataaagttaaattgtcttcggataagctataagttgttttcataagt 36070269  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 42391318 - 42391377
Alignment:
Q  31 atttttataacaaaagaaaaatag--tttaattgtttttgtataatctataagttgtttt 88  Q
    ||||||||||| ||| |||||||   || ||||||||||||||| |||||||||||||||    
T  42391318 atttttataacgaaacaaaaataacattaaattgtttttgtatattctataagttgtttt 42391377  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 49004113 - 49004023
Alignment:
Q  6 aatgacaagcgcttatgtgtaagtcatttttataacaaaaga-aaaatagtttaattgtttttgtataatctataagttgttttcataagt 95  Q
    ||||| |||||||||||| ||||  |||| |||| ||||||| ||||||||| ||||||||| |||| | |||||| || |||||||||||    
T  49004113 aatgataagcgcttatgtataagcaatttctatagcaaaagataaaatagttaaattgttttcgtattagctataacttattttcataagt 49004023  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 17884009 - 17884086
Alignment:
Q  20 atgtgtaagtcatttttataacaaaaga-aaaata--gtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||||||||  |||| |||||||||||| ||||||  ||| ||||||||||||||||  ||| |||||||||||||||    
T  17884009 atgtgtaagctatttctataacaaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataag 17884086  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 2466005 - 2465972
Alignment:
Q  60 ttgtttttgtataatctataagttgttttcataa 93  Q
    |||||||||||||| |||||||||||||||||||    
T  2466005 ttgtttttgtataagctataagttgttttcataa 2465972  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 6466134 - 6466098
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  6466134 aattctttttgtataatctataagttgtttccataag 6466098  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 24626272 - 24626313
Alignment:
Q  53 agtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  24626272 agttaaattgtttttgtatattctataagttgttttcataag 24626313  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 35099008 - 35099055
Alignment:
Q  47 aaaaatagtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||||| |||||||||||||||||||   |||||||||||||||||||    
T  35099008 aaaaattgtttaattgtttttgtatatgttataagttgttttcataag 35099055  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 2735026 - 2735087
Alignment:
Q  36 tataacaaaaga-aaaata--gtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||||||||||| ||||||  ||| |||| ||||||||||||||||||| ||||||||||||    
T  2735026 tataacaaaagataaaataaagttaaattatttttgtataatctataagctgttttcataag 2735087  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 4006696 - 4006732
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  4006696 aattgtttttatataagctataagttgttttcataag 4006732  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 6909965 - 6909925
Alignment:
Q  53 agtttaattgtttttgtataatctataagttgttttcataa 93  Q
    |||| |||||||||||||||  |||||||||||||||||||    
T  6909965 agttaaattgtttttgtatatgctataagttgttttcataa 6909925  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 31776363 - 31776327
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    |||||||||||||||||  ||||||||||||||||||    
T  31776363 aattgtttttgtataattaataagttgttttcataag 31776327  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 94
Target Start/End: Original strand, 22203417 - 22203448
Alignment:
Q  63 tttttgtataatctataagttgttttcataag 94  Q
    ||||||||||||||||||||||||||||||||    
T  22203417 tttttgtataatctataagttgttttcataag 22203448  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 21367644 - 21367685
Alignment:
Q  53 agtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  21367644 agttaaattgttttcgtataatgtataagttgttttcataag 21367685  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 37788814 - 37788878
Alignment:
Q  33 ttttataacaaaaga-aaaata--gtttaattgtttttgtataatctataagttgttttcataag 94  Q
    ||||||||||||||| ||||||  ||  |||| |||| |||||||||||||||||||||||||||    
T  37788814 ttttataacaaaagataaaataaagtccaattattttcgtataatctataagttgttttcataag 37788878  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 32095315 - 32095244
Alignment:
Q  25 taagtcatttttataacaaaaga-aaaat--agtttaattgtttttgtataatctataagttgttttcataa 93  Q
    ||||| |||| |||||||||||| |||||  |||| |||||||||||||||| |||||||  ||||||||||    
T  32095315 taagttatttctataacaaaagataaaattaagttaaattgtttttgtataaactataagccgttttcataa 32095244  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 46886808 - 46886744
Alignment:
Q  31 atttttataacaaaaga-aaaatagtttaattgtttttgtataatctataagttgttttcataag 94  Q
    |||| |||| ||||||| ||||||||| |||| ||||||||| | ||||||| ||||||||||||    
T  46886808 atttctatatcaaaagataaaatagttaaattatttttgtatgagctataagctgttttcataag 46886744  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 40009404 - 40009481
Alignment:
Q  13 agcgcttatgtgtaagtcatttttataacaaaaga-aaaata--gtttaattgtttttgtataatctataagttgttt 87  Q
    ||||||||||| ||||   |||||||||||||||| ||||||  ||| ||||||||||  ||||||||||||||||||    
T  40009404 agcgcttatgtataagctgtttttataacaaaagacaaaataaagttaaattgtttttccataatctataagttgttt 40009481  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 44917621 - 44917589
Alignment:
Q  61 tgtttttgtataatctataagttgttttcataa 93  Q
    ||||||||||||||||||||||||||| |||||    
T  44917621 tgtttttgtataatctataagttgtttccataa 44917589  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 1977121 - 1977091
Alignment:
Q  65 tttgtataatctataagttgttttcataagt 95  Q
    |||||||||||||||||||||||||||||||    
T  1977121 tttgtataatctataagttgttttcataagt 1977091  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 39621938 - 39621970
Alignment:
Q  63 tttttgtataatctataagttgttttcataagt 95  Q
    ||||||||||||||||||| |||||||||||||    
T  39621938 tttttgtataatctataagctgttttcataagt 39621970  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 40889490 - 40889526
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  40889490 aattatttgtgtataatctataagttgttttcataag 40889526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 926473 - 926506
Alignment:
Q  61 tgtttttgtataatctataagttgttttcataag 94  Q
    ||||||||||| ||||||||||||||||||||||    
T  926473 tgtttttgtattatctataagttgttttcataag 926506  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 3269676 - 3269708
Alignment:
Q  58 aattgtttttgtataatctataagttgttttca 90  Q
    ||||| |||||||||||||||||||||||||||    
T  3269676 aattgattttgtataatctataagttgttttca 3269708  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 17368661 - 17368694
Alignment:
Q  61 tgtttttgtataatctataagttgttttcataag 94  Q
    ||||||||| ||||||||||||||||||||||||    
T  17368661 tgtttttgtgtaatctataagttgttttcataag 17368694  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 6587195 - 6587159
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  6587195 aattgttttcgtataagctataagttgttttcataag 6587159  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 10272519 - 10272483
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  10272519 aattgttttcgtataagctataagttgttttcataag 10272483  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 18857488 - 18857452
Alignment:
Q  58 aattgtttttgtataatctataagttgttttcataag 94  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  18857488 aattgtttttctataatctataagctgttttcataag 18857452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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