View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18943_low_4 (Length: 634)
Name: NF18943_low_4
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 5 - 618
Target Start/End: Original strand, 3272645 - 3273259
Alignment:
| Q |
5 |
agtgagatgaaaggaccaaaaaagaagagtgtcattgtagacaacaaaaggaagaagaaaaatttgttgtgtaatcttgctcagtaaccctttccacacc |
104 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3272645 |
agtgatatggaaggaccaaaaaagaagagtgtcattgtagacaacaaaaggaagaagaaaaatttgttgtgtaatcttgttcagtaaccctttccacacc |
3272744 |
T |
|
| Q |
105 |
tcttatgttactcaagtagtaatatctcatccaattttgcagtatgcatcaatcaatatactatgagccatactgattatatcaatgactgcagttcttc |
204 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3272745 |
tcttatgttactcaagtagtaagatctcatccaattttgcagtatgcatcaatcaatatactatgagccatactgattatatcaatgactgcagttcttc |
3272844 |
T |
|
| Q |
205 |
ctcttgtcgcaactcgttgagccgcctcttagcatagattgtgaaaaatattgttgtagctacagctatgcagaagccaacaacattgaaggcgatttgt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3272845 |
ctcttgtcgcaactcgttgagccgcctcttagcatagattgtgaaaaatattgttgtagctacagctatgcagaagccaacaacattgaaggcaatttgt |
3272944 |
T |
|
| Q |
305 |
ggagcagataatccatgtgttttgtgtgagacattagccaatgctcgtatcagaattccgctgtagagttagacagttatagctagtaatgtatttataa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3272945 |
ggagcagataatccatgtgttttgtgtgagacattagccaatgcccgtatcagaattccgctgtagagttagacagttatagctagtaatgtatttataa |
3273044 |
T |
|
| Q |
405 |
aaactattgaaacaaaccaacattgaaaatggcttacaacataagcatatgagttt-aaaacattgtaaaacaagatagggaaagagagatcctacgtgt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3273045 |
aaactattgaaacaaaccaacattgaaaatggcttacaacataagcatatgagtttaaaaacattgtaaaacaagatagggaaagagagatcctacgtgt |
3273144 |
T |
|
| Q |
504 |
aaatcgaagcaattacttctggtaacattcctgccaaagatccacacaagtaaggaccatattgaacatttgttgcagtagcacaatagttatagatcat |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3273145 |
aaatcgaagcaattacttctggtaacattcctgccaaagatccacacaagtaaggaccatattgaacatttgttgcagtagcacaatagttatagatcat |
3273244 |
T |
|
| Q |
604 |
gtaagggaatggaga |
618 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3273245 |
gtaagggaatggaga |
3273259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University