View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_low_5 (Length: 537)
Name: NF18943_low_5
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 12 - 524
Target Start/End: Original strand, 34059172 - 34059680
Alignment:
| Q |
12 |
agagacgacgaggagaggaaagtgaaactagagaaggacgcgtgtcctggatttatatcggacggttatgggagagtgacgtggaggaatagtgcataca |
111 |
Q |
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| T |
34059172 |
agagacgacgaggagaggaaagtgaaactagagaaggacgcgtgtcctggatttatatcggacggttatgggagagtgacgtggaggaatagtgcataca |
34059271 |
T |
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| Q |
112 |
gggaaatggtgggagaagggcaagtttggttggttagggtaccggacagtgaaagtggattcacgtgcagggtgagagtacagtacgcgtatgggaaaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059272 |
gggaaatggtgggagaagggcaagtttggttggttagggtaccggacagtgaaagtggattcacgtgcagggtgagagtacagtacgcgtatgggaaaga |
34059371 |
T |
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| Q |
212 |
gagaagagttccgtgtgatgcgtggagattggactgtggtggttttgcatggagattagatgttactgctgctcttgccttgagttgtttccctttctaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059372 |
gagaagagttccgtgtgatgcgtggagattggactgtggtggttttgcatggagattagatgttactgctgctcttgccttgagttgtttccctttctaa |
34059471 |
T |
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| Q |
312 |
attgatggtnnnnnnnntcatgtctatgatctatacttaatcaaaacaaggctcctagttactactgttgataactgtcaatattatctatctctgagat |
411 |
Q |
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| T |
34059472 |
attcatggtaaaaaaaatcatgtctatgatctatacttaatcaaaacaaggctcctagttactactgttgataactgtcaatat----tatctctgagat |
34059567 |
T |
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| Q |
412 |
gagactgagaactagcttgcttaatttgatcattaactatgtattaattgagtaggaaattaggctagctactttagatgcatcaatttgtatattatcg |
511 |
Q |
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| T |
34059568 |
gagactgacaactagcttgcttaatttgatcattaactatgtattaattgagtaggaaattaggctagctactttagatgcatcaatttgtatattatcg |
34059667 |
T |
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| Q |
512 |
tgggtgtaataat |
524 |
Q |
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||||||||||||| |
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| T |
34059668 |
tgggtgtaataat |
34059680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 42974544 - 42974606
Alignment:
| Q |
225 |
tgtgatgcgtggagattggactgtggtggttttgcatggagattagatgttactgctgctctt |
287 |
Q |
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| T |
42974544 |
tgtgatgtgtggagaatggattgtggtgggtttgcatggagattagatgttaaagctgctctt |
42974606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 42974345 - 42974394
Alignment:
| Q |
47 |
ggacgcgtgtcctggatttatatcggacggttatgggagagtgacgtgga |
96 |
Q |
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| T |
42974345 |
ggacacgtgtccagggtttatatcggacggttacgggagagtgacgtgga |
42974394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 8059460 - 8059528
Alignment:
| Q |
219 |
gttccgtgtgatgcgtggagattggactgtggtggttttgcatggagattagatgttactgctgctctt |
287 |
Q |
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||||| ||||||| |||||||| || |||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
8059460 |
gttccttgtgatgtttggagattagagtgtggtgggtttgcatggaggttagatgttaaagctgctctt |
8059528 |
T |
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