View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18943_low_9 (Length: 418)
Name: NF18943_low_9
Description: NF18943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18943_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 45521013 - 45521416
Alignment:
| Q |
1 |
attcaagtcgaaactaccagacatatacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45521013 |
attcaagtcgaaactaccagacatatacatcccaaaccatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctc |
45521112 |
T |
|
| Q |
101 |
atcaatgcccccactggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45521113 |
atcaatgcccccaccggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtg |
45521212 |
T |
|
| Q |
201 |
aagtcatcatgatcctccttcccaattcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccgccaatcctttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45521213 |
aagtcatcatgatcctccttcccaattcccctgaattcgtcttctcctttcttgctgcttcttatctcggcgctgtagccactgcagccaatcctttctt |
45521312 |
T |
|
| Q |
301 |
cacggctgctgagattggaaagcaagcaatatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaagatttgttgaacaac |
400 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45521313 |
cacggcttctgagattggaaagcaagcaaaatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaagatttgttgaacaac |
45521412 |
T |
|
| Q |
401 |
aatg |
404 |
Q |
| |
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|||| |
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| T |
45521413 |
aatg |
45521416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 391
Target Start/End: Original strand, 349765 - 350130
Alignment:
| Q |
26 |
tacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccactggaaaggtct |
125 |
Q |
| |
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||||| || ||||| || || |||||||||||||| ||||||||||| || ||| ||||||||||| || ||||||||||| || |||| | | | |
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| T |
349765 |
tacattcccaaacaccttcctcttcattcatattgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgctccaactgctgaaattt |
349864 |
T |
|
| Q |
126 |
acacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtgaagtcatcatgatcctccttcccaa |
225 |
Q |
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|||||||| | || |||||||||||| | | ||||| ||||| ||||| ||||| | || ||||||| || || ||||||||| | || || || || |
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| T |
349865 |
acacctactatgatgtccaactcaccgcgcaaaaagtcgcctccggtctcaacaaacttggcatccaacagggggatgtcatcatggttcttctccctaa |
349964 |
T |
|
| Q |
226 |
ttcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccgccaatcctttcttcacggctgctgagattggaaagcaa |
325 |
Q |
| |
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|| ||| ||||| || ||| ||||||| |||||||||| || |||||| || |||||||||||||| |||||||| | |||||||||| || ||| |
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| T |
349965 |
ttgcccggaatttgtgttcgcctttctcggtgcttcttttcgcggcgccataatgactgccgccaatcccttcttcacttcagctgagattgctaaacaa |
350064 |
T |
|
| Q |
326 |
gcaatatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaagatttg |
391 |
Q |
| |
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|||| | | ||||| || ||| | | |||||||| ||||||||||||||||| || |||||| |
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|
| T |
350065 |
gcaaaagcttccaatactaagttgcttgtaacacaagcttgttactatgacaaagttaaggatttg |
350130 |
T |
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