View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18944_high_2 (Length: 445)
Name: NF18944_high_2
Description: NF18944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18944_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 3 - 429
Target Start/End: Original strand, 27841264 - 27841690
Alignment:
| Q |
3 |
cacagaaacttattttcatataaggtgcatcgagaatattcaccatacatgcaacacgctgcccactttgttcctaggaggggacacacttcattggagc |
102 |
Q |
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| T |
27841264 |
cacacaaacttattttcatataaggtgcatcgagaatattcaccatacatgcaacacgctgcccactttgttcctaggaggggacacacttcactggagc |
27841363 |
T |
|
| Q |
103 |
cctacaaatcgatccttgattgcctggatgtggacgaagtcatattcaacccatacaatgatcatcgggaggtgtatgactttgaaaagatattatagta |
202 |
Q |
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| T |
27841364 |
cctacaaatcaatccttgattgcctggatgtggacgaagtcatatttaacccatacaatgatcatcgggaggtgtatgactttgaaaagatattatagta |
27841463 |
T |
|
| Q |
203 |
ctcgggttggattatgtgcagtcgaggaaaggtgtaccgccacttgaagaggaaatgcagacatgtgtaggacattccaagacatctattagttcttcat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |
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| T |
27841464 |
ctcgggttggattatgtgcagtcgaggaaaggtgtaccgccacttgaagaggaaatgcaggcatgtgtaggacattccaagacatctatcagttcttcct |
27841563 |
T |
|
| Q |
303 |
gctcttggtgtagcccagttaattgaggctttccagaatttcttgttgtacgtcatatttgaggttgattggggttcgatgttaaaggatccatggcagt |
402 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27841564 |
gctcttggtgtagcccagttagttgaggctttccagaatttcttgttgtacgtcatatttgaggttgattggggttcgattttaaaggatccatggcagc |
27841663 |
T |
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| Q |
403 |
atgcaccaggatgcatggcctagttct |
429 |
Q |
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| T |
27841664 |
acgcaccaggatacatggcctagttct |
27841690 |
T |
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