View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18944_high_3 (Length: 235)
Name: NF18944_high_3
Description: NF18944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18944_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 40 - 219
Target Start/End: Original strand, 19370286 - 19370465
Alignment:
| Q |
40 |
tacatagaagtagaatggaaaagaaaagacatgacattaaaaacctcatccatgataagagtttgaagctttggtaaatgtgaaagtagaatattcagcc |
139 |
Q |
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| T |
19370286 |
tacatagaagtggaatggaaaagaaaagacatgacattaaaaacctcatcaatgataagagtttgaagctttgggacatgtgaaagtagaatattcagcc |
19370385 |
T |
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| Q |
140 |
atgtccatttgaatgaccccactcccagccgttcatgatcaatgtctaatgtaagctccagatgagttaaattgtcaaac |
219 |
Q |
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| T |
19370386 |
atgtccatttgaatgaccccactcccagccattcatggtcaatgtctaatgtaagctccagatgagttaaattgtcaaac |
19370465 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 19370105 - 19370136
Alignment:
| Q |
1 |
atgatacacaattgaaatgttttgaaatatat |
32 |
Q |
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| T |
19370105 |
atgatacacaattgaaatgttttgaaatatat |
19370136 |
T |
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