View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18944_low_3 (Length: 334)
Name: NF18944_low_3
Description: NF18944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18944_low_3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 41624226 - 41624552
Alignment:
| Q |
8 |
cgaagaatatcgcggctgtggatttgtggaccatgcttaatcaatgtgcacaagctgtggcgagctacgatcaaaggaatacagatgagctactcaaaca |
107 |
Q |
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| T |
41624226 |
cgaaaaatgtcgcggctgtggatttgtggaccatgcttaatcaatgtgcacaagctgtggcgagctacgatcaaaggaatacagatgagctactcaaaca |
41624325 |
T |
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| Q |
108 |
gattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtcttgagataagattggctgccgagacaccatca |
207 |
Q |
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| T |
41624326 |
gattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtcttgagataagattggctgccgagacgccatca |
41624425 |
T |
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| Q |
208 |
tatcagcctcttgatgtggcaactgctggagatatgttgaaagcttacaaactatttgttactgcgtctcctttgcagagaatgacaaatgctttgctaa |
307 |
Q |
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| T |
41624426 |
tatcagcctctttatgtggcaactgctggagatatgttgaaagcttacaaactatttgttactgcgtctcctttgcagagaatgacaaatgctttgctaa |
41624525 |
T |
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| Q |
308 |
ccaaaacgattttcaaaatagtgaaga |
334 |
Q |
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| T |
41624526 |
ccaaaacgattttcaaaatagtgaaga |
41624552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 41627197 - 41627513
Alignment:
| Q |
18 |
cgcggctgtggatttgtggaccatgcttaatcaatgtgcacaagctgtggcgagctacgatcaaaggaatacagatgagctactcaaacagattaggcaa |
117 |
Q |
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| T |
41627197 |
cgcggctgtggatttgtggaccatgctaaatcaatgtgcacaagctgtggcgagctacgatcaaaggaatacagatgagctactcaaacagattaggcat |
41627296 |
T |
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| Q |
118 |
cactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtcttgagataagattggctgccgagacaccatcatatcagcctc |
217 |
Q |
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| T |
41627297 |
cactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtcttgagataagattggctgctgagacgccatcatatcagcctc |
41627396 |
T |
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| Q |
218 |
ttgatgtggcaactgctggagatatgttgaaagcttacaaactatttgttactgcgtctcctttgcagagaatgacaaatgctttgctaaccaaaacgat |
317 |
Q |
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| T |
41627397 |
ttgatgtggcaactgctggagatatgttgaaagcttacaaactatttgttaccgcgtctcctttgcagagagtgacaaatactttgctaaccaaaacgat |
41627496 |
T |
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| Q |
318 |
tttcaaaatagtgaaga |
334 |
Q |
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| T |
41627497 |
tttcaaaatagtgaaga |
41627513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 297
Target Start/End: Original strand, 41620896 - 41621169
Alignment:
| Q |
24 |
tgtggatttgtggaccatgcttaatcaatgtgcacaagctgtggcgagctacgatcaaaggaatacagatgagctactcaaacagattaggcaacactct |
123 |
Q |
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| T |
41620896 |
tgtggatttgtggactatgctaactcaatgtgcacaggccgtggcaagctatgatcaaaggaatacaaatgagctactcaagcagattaggaaacactct |
41620995 |
T |
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| Q |
124 |
tcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtcttgagataagattggctgccgagacaccatcatatcagcctcttgatg |
223 |
Q |
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| T |
41620996 |
tcgccttttggggatggacttcagcggttagctcattactttgctaatggtcttgagataagatttgctgccgagattccatcgtatatgccgcttgatg |
41621095 |
T |
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| Q |
224 |
tggcaactgctggagatatgttgaaagcttacaaactatttgttactgcgtctcctttgcagagaatgacaaat |
297 |
Q |
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| T |
41621096 |
tagtaactgctggagatatgttgaaagcttacaaactattcgttacctcatctcctttgcagagaatgacaaat |
41621169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 180
Target Start/End: Original strand, 23930095 - 23930227
Alignment:
| Q |
48 |
tcaatgtgcacaagctgtggcgagctacgatcaaaggaatacagatgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaa |
147 |
Q |
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|||||||||||||||||| | ||||| |||||||||||| || |||| |||| || ||||||||||| || |||||||| ||||||||||| || |
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| T |
23930095 |
tcaatgtgcacaagctgttggtagctatgatcaaaggaatgcaaatgatatactgaagcagattaggcagcattcttcgccaagtggcgatggacttcag |
23930194 |
T |
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| Q |
148 |
cgtttagctcattactttgctaatggtcttgag |
180 |
Q |
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| T |
23930195 |
cgtttagctcattactttgctgatggacttgag |
23930227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 23912438 - 23912350
Alignment:
| Q |
92 |
atgagctactcaaacagattaggcaacactcttcgcctttcggcgatggactccaacgtttagctcattactttgctaatggtcttgag |
180 |
Q |
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| T |
23912438 |
atgagctactgaagcagattaggcaacattcttcaccctctggggatggaccacaaaggttggctcattactttgccaatggccttgag |
23912350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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