View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18944_low_4 (Length: 272)
Name: NF18944_low_4
Description: NF18944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18944_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 41624825 - 41624573
Alignment:
| Q |
20 |
tgtctatctttagatccttgagacggatggtttcccatttctgtgcaatgaagttgtattcaaatggtacattgaacttcttgcagtagtttgctagacg |
119 |
Q |
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| T |
41624825 |
tgtctatctttagatccttgagacggatggtttcccatttctgtgcaatgaagttgtattcaaatggtacattgaacttcttgcagtagtttgctagacg |
41624726 |
T |
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| Q |
120 |
ccgtccggtttcctccaccctttctgcaggtctaaatcctggctgaggaagctcaattcctgtaattcgaagcttcggaggaccaccaggtcttaatgat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41624725 |
ccgtccggtttcctccaccctttctgcaggtctaaatcctcgctgaggaagctcaattcctgtaattcgaagcttcggaggaccaccaggtcttaatgat |
41624626 |
T |
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| Q |
220 |
agttttctgacgaggcacggccactggaaaccatagaaaatcccaaaatcaat |
272 |
Q |
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| T |
41624625 |
agttttctgacgaggcacggccactggaaaccatagcaaattccaaaatcaat |
41624573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 41627786 - 41627534
Alignment:
| Q |
20 |
tgtctatctttagatccttgagacggatggtttcccatttctgtgcaatgaagttgtattcaaatggtacattgaacttcttgcagtagtttgctagacg |
119 |
Q |
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|||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41627786 |
tgtctatctttagatcctcgagacagacggtttcccatttctgtgcaatgaagttgtattcaaatggtacattgaacttcttgcagtattttgctagacg |
41627687 |
T |
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| Q |
120 |
ccgtccggtttcctccaccctttctgcaggtctaaatcctggctgaggaagctcaattcctgtaattcgaagcttcggaggaccaccaggtcttaatgat |
219 |
Q |
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| T |
41627686 |
ccgtccggtttcctccaccctttctgtaggtctaaatcctggttgaggaagctcaattcctgtaattcgaagctttggaggaccaccaggtcttaatgat |
41627587 |
T |
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| Q |
220 |
agttttctgacgaggcacggccactggaaaccatagaaaatcccaaaatcaat |
272 |
Q |
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||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
41627586 |
agtcttctgacgaggcacggccactggaaaccatagcaaattccaaaatcaat |
41627534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 41621479 - 41621227
Alignment:
| Q |
20 |
tgtctatctttagatccttgagacggatggtttcccatttctgtgcaatgaagttgtattcaaatggtacattgaacttcttgcagtagtttgctagacg |
119 |
Q |
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|||||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
41621479 |
tgtctatctttagatcctcgagccggatagtttcccatttctgtgcaatgcagttgtattcaaatggtacattgaacttcttgcagtagttctctaaacg |
41621380 |
T |
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| Q |
120 |
ccgtccggtttcctccaccctttctgcaggtctaaatcctggctgaggaagctcaattcctgtaattcgaagcttcggaggaccaccaggtcttaatgat |
219 |
Q |
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|| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| | ||| |
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| T |
41621379 |
ccttcctgtttcctctgccctttctgcaggcctaaatcctggctgaggaagctcaattcccgtaattcgaagctttgcaggaccaccaggtctcattgaa |
41621280 |
T |
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| Q |
220 |
agttttctgacgaggcacggccactggaaaccatagaaaatcccaaaatcaat |
272 |
Q |
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|||||| ||| ||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
41621279 |
agttttttgattaggcatggccactggaaaccatagcaaattccaaaatcaat |
41621227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 23930538 - 23930482
Alignment:
| Q |
136 |
accctttctgcaggtctaaatcctggctgaggaagctcaattcctgtaattcgaagc |
192 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
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| T |
23930538 |
accctttctgcaggcctaaatcctggctgaggaagatcaattcctgtaatacgaagc |
23930482 |
T |
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