View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_high_10 (Length: 446)
Name: NF18945_high_10
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 40447291 - 40447409
Alignment:
| Q |
19 |
atttcagtataataaagtcattaaattgtacaccatactatttaagaagcctattgattataataaaacagaaagcagtattagtataccaacaaataat |
118 |
Q |
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| T |
40447291 |
atttcagtataataaagtcattaaattgtacaccatactatttaagaagcctattgattataataaaacagaaagcagtattagtataccaacaaataat |
40447390 |
T |
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| Q |
119 |
tatactcctccgctatgat |
137 |
Q |
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| T |
40447391 |
tatactcctccgctatgat |
40447409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 349 - 439
Target Start/End: Original strand, 40447621 - 40447711
Alignment:
| Q |
349 |
taaccatatgatgcaaactatttatcagctctgctaatgattgaactttaatgaaatatttggctaattatctttggtggatcttcatctc |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40447621 |
taaccatatgatgcaaactatttatcagctctgctaatgattgaactttaatgaaatatttggctaattatctttggtggatcttcttctc |
40447711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 40447477 - 40447540
Alignment:
| Q |
205 |
taattatactttctggtaagaaaacagataattatatttttcgtgctatttttaaaagggtggc |
268 |
Q |
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| T |
40447477 |
taattatactttctggtaagaaaacagataattatatttttcgtgctatttttaaaagggtggc |
40447540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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