View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_high_11 (Length: 445)
Name: NF18945_high_11
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 12129294 - 12128862
Alignment:
| Q |
1 |
aaagtgttgcagaagacgggtttgataaagagttaatggggttaaccggaggatttcctggtggtgaaaaaggtttgaaaaaattcattgaagagaaccc |
100 |
Q |
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| T |
12129294 |
aaagtgttgcagaagacgggtttgataaagagttaatggggttaaccggaggatttcctggaggtgaaaaaggtttgaaaaaattcattgaagagaaccc |
12129195 |
T |
|
| Q |
101 |
tcttccaaaaactgttaaaggaaacaaaagccttaaactttcttcatcagagaaggcaaaaccaccagaacttccaatgttgcttccaggaatgattgct |
200 |
Q |
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| T |
12129194 |
tcttcctaaaactgttaaaggaaacaaaagccttaaactttcttcatcggagaagccaaaaccaccggaacttcctatgttacttccaggaatgattgct |
12129095 |
T |
|
| Q |
201 |
attgtgaagaatcaaaataaccctttttacatgtactgtggtattgttcaaagaattactgatggtaaagcaggagtactgtttgaaggagggaattggg |
300 |
Q |
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| T |
12129094 |
attgtgaagaatcaaaataatcctttttacatgtactgtggtattgttcaaagaatcactgatggtaaagcaggagtactgtttgaaggagggaattggg |
12128995 |
T |
|
| Q |
301 |
ataagttgatcacctttaggcttgaggaacttgagagaagagaaaaaggtcctcctatgaagaatcctaagtcttgtgttcttgaaccatttcttgtaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12128994 |
ataagttgatcacctttaggcttgaggaacttgagagaagagaaaaaggtcctcctatgaagaatcctaagtcttgcgttcttgaaccatttcttgtaaa |
12128895 |
T |
|
| Q |
401 |
gaaatcatagttttcagctctttgttgttattg |
433 |
Q |
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| T |
12128894 |
gaaatcatagttttcagctctttgttgttattg |
12128862 |
T |
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