View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18945_high_12 (Length: 429)
Name: NF18945_high_12
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_high_12 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 7705085 - 7705506
Alignment:
| Q |
7 |
tggacatcatcattgaacattttctcagaactttttacttactgaacagtgccannnnnnnnnnnnnnnngctttctttgttatcttt-ggaatttctag |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
7705085 |
tggacaacatcattgaacattttctcagaactttttacttactgaacagtgccattttttttttctttttgctttctttgttatctttaggagtttctag |
7705184 |
T |
|
| Q |
106 |
cattcttgttgcacacaataaacttcaaaattagttgagattaaacattttagtcaaaacaaattcatagtatgagcacaagataagcaggaagtaaaat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705185 |
cattcttgttgcacacaataaacttcaaaattagttgagattaaatattttagtcaaaacaaattcatagtatgagcacaagataagcaggaagtaaaat |
7705284 |
T |
|
| Q |
206 |
agttctgcagaaacctatatatgtagattgacacttgacatcaaatgtgtgtttaatcataatatgcaccttttatgaaggtcccagcaaatagcttcat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7705285 |
agttctgcagaaacctatatatgtagattgacacttgacataaaatgtgtgtttaatcataatatgcaccttttatgaaggtcccagcaaatagctttat |
7705384 |
T |
|
| Q |
306 |
ataagctcaaagacatatttatcagtttcatataaatgttcatttggttctgcaatgtgtccagcgaccgacaaattcaattctgcagattcatggcaac |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
7705385 |
ataagctcaaagacatatttatcagtttcatataaatattcattt-gttctacaatg-gtccagcgaccgaaaaattcaattctgcagattcatggcacc |
7705482 |
T |
|
| Q |
406 |
aacctgtgtatcagaaattaaatt |
429 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7705483 |
aacctgtgtatcagaaattaaatt |
7705506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University