View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_high_13 (Length: 398)
Name: NF18945_high_13
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 17148681 - 17148310
Alignment:
| Q |
9 |
agcagagaattgttctgctaatgtcatatgagctgtttttataagaattatctttattgaaagatgataaagagatagacccatttggaatatgacagaa |
108 |
Q |
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| T |
17148681 |
agcagagaattgttctgctaatgtcatatgagctgtttttataagaattatctttattgaaagatgataaagagatagacccatttggaatatgacagaa |
17148582 |
T |
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| Q |
109 |
tgttattcattctcagatacactttgcagttctgnnnnnnngttttataagcactttgttgttctcttattaggcccctactatccctttaaagcttatg |
208 |
Q |
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| T |
17148581 |
tgttattcattctcagatacactttgcagttctgtttttttgttttataagcactttgttgttctcttattaggcccctactatccctttaaagcttatg |
17148482 |
T |
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| Q |
209 |
tcaatatcaaatctaattcattaaaataaatgtaacactaacattagtaatctttgttatcacacttcattgacttattgatcaattcatagcttatcca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17148481 |
tcaatatcaaatctaattcattaaaataaatgtaacacaaacattagtaatctttgttatcacacttcattgacttattgatcaattcatagcttatcca |
17148382 |
T |
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| Q |
309 |
ataccattaaaataaatgtaacattagtgttactattaataaatttaactctacttaggtgtctatttcgtg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17148381 |
ataccattaaaataaatgtaacattagtgttactattaataaatttaactctacttaggtgtctatttcgtg |
17148310 |
T |
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