View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_high_17 (Length: 307)
Name: NF18945_high_17
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 65 - 292
Target Start/End: Complemental strand, 33977329 - 33977102
Alignment:
| Q |
65 |
aatcataatatctttgtggaataccaaaaatgtatcaaagaatatatatttttctcacttgttcgaagatataattttggagactctttaagaagcagaa |
164 |
Q |
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| T |
33977329 |
aatcataatatctttgtggaataccaaaaatgtatcaaagaatatatatttttctcacttgttggaagatataattttggagactctttaagaagcagaa |
33977230 |
T |
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| Q |
165 |
aagtgagtcagatagaagaggtagtggaagaaagggaatggtgggggataaaaatgtaataaaatcaacctaatatatgatcgcattgaacctgctttta |
264 |
Q |
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| T |
33977229 |
aagtgagtcagatagaagaggtagtggaagaaagggaatggtgggggataaaaatgtaataaaatcaacctaatatatgatcgcattgaacctgctttta |
33977130 |
T |
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| Q |
265 |
tgatagtcttaatttacaccataaatat |
292 |
Q |
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| T |
33977129 |
tgatagtcttaatttacaccataaatat |
33977102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 33977406 - 33977328
Alignment:
| Q |
13 |
aatatgtaacaaatagatgtttccatctggtatgctaaagtgtctcaaagagaatcataatatctttgtggaataccaa |
91 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33977406 |
aatatgtaacaaatagatgtttccatttggtatgctacagtgtctcaaagagaatcataatatctttgtggaataccaa |
33977328 |
T |
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