View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18945_high_18 (Length: 305)

Name: NF18945_high_18
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18945_high_18
NF18945_high_18
[»] chr2 (9 HSPs)
chr2 (23-206)||(30072601-30072784)
chr2 (3-153)||(30012893-30013043)
chr2 (3-132)||(30366688-30366817)
chr2 (3-132)||(968523-968652)
chr2 (202-289)||(30013126-30013213)
chr2 (202-289)||(30072851-30072938)
chr2 (202-283)||(34947071-34947152)
chr2 (164-206)||(30369309-30369351)
chr2 (171-206)||(30013045-30013080)
[»] chr1 (1 HSPs)
chr1 (3-132)||(23218952-23219081)
[»] chr4 (2 HSPs)
chr4 (3-132)||(38824690-38824819)
chr4 (164-206)||(38827431-38827473)
[»] chr3 (4 HSPs)
chr3 (202-277)||(28750267-28750342)
chr3 (202-289)||(51122698-51122785)
chr3 (213-277)||(28740495-28740559)
chr3 (151-206)||(51122226-51122281)
[»] chr5 (2 HSPs)
chr5 (208-277)||(39942408-39942477)
chr5 (151-206)||(39016391-39016448)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 30072601 - 30072784
Alignment:
Q  23 atgtatttactgtcccaaggagataaggtttgacggtggaacgagttcaatgagaagtcattggttgaaacaccaagaggaagataggaacaagaagcag 122  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072601 atgtatttactgtcccaaggagataaagtttaatggtggaacgagttcaatgagaagtcattggttgaaacaccaagaggaagataggaacaagaagcag 30072700  T
Q  123 aaatcgggttatccttgtctttgcttgctatgccttgtctttgcttgctatgctgttttactcctgtataaattataggatttg 206  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30072701 aaatcgggttatccttgtctttgcttcctatgccttgtctttgcttgctatgctgttttactcttgtataaattataggatttg 30072784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 30012893 - 30013043
Alignment:
Q  3 gaggaggagcagagagcaaaatgtatttactgtcccaaggagataaggtttgacggtggaacgagttcaatgagaagtcattggttgaaacaccaagagg 102  Q
    ||||||||  ||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  30012893 gaggaggaaaagagagcaaaatgtatttactgttctaaggagataaagtttaacggtggaacgagttcaatgagaagtcattggttgaaacaccaatagg 30012992  T
Q  103 aagataggaacaagaagcagaaatcgggttatccttgtctttgcttgctat 153  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30012993 aagataggaacaagaagcagaaattgggttatccttgtctttgcttgctat 30013043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 30366688 - 30366817
Alignment:
Q  3 gaggaggagcagagagcaaaatgtatttactgtcccaaggagataaggtttgacggtggaacgagttcaatgagaagtcattggttgaaacaccaagagg 102  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  30366688 gaggaggaaaagagagcaaaatgtctttactgtcccaaggagataaagtttaacggtggaacgagttcaatgagaaatcattggttgaaacaccaagagg 30366787  T
Q  103 aagataggaacaagaagcagaaatcgggtt 132  Q
    ||||||||||||||||||| ||||||||||    
T  30366788 aagataggaacaagaagcaaaaatcgggtt 30366817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 968652 - 968523
Alignment:
Q  3 gaggaggagcagagagcaaaatgtatttactgtcccaaggagataaggtttgacggtggaacgagttcaatgagaagtcattggttgaaacaccaagagg 102  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  968652 gaggaggaaaagagagcaaaatgtatttactgtcccaaggagataaagtttaacggtggaacaagttcaatgagaaatcattagttgaaacaccaagagg 968553  T
Q  103 aagataggaacaagaagcagaaatcgggtt 132  Q
    |||||||||| |||||||||||||| ||||    
T  968552 aagataggaataagaagcagaaatcaggtt 968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 30013126 - 30013213
Alignment:
Q  202 atttgacactgccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttcttagtggatgattg 289  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30013126 atttgacactgccaatgatgttaagaatcttggtttaggatggatgattgcatttctatttgttgttagctttcttggtggatgattg 30013213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 30072851 - 30072938
Alignment:
Q  202 atttgacactgccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttcttagtggatgattg 289  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30072851 atttgacactgccaatgatgttaagaatcttggtttaggatggatgattgcatttctatttgttgttagctttcttggtggatgattg 30072938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 283
Target Start/End: Complemental strand, 34947152 - 34947071
Alignment:
Q  202 atttgacactgccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttcttagtgga 283  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  34947152 atttgacactgctaatgatgttaagagtctttgtttaggatggatgattggatttctatttgttgttagctttcttggtgga 34947071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 30369309 - 30369351
Alignment:
Q  164 tgcttgctatgctgttttactcctgtataaattataggatttg 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  30369309 tgcttgctatgttgttttactcctgtataaattataggatttg 30369351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 30013045 - 30013080
Alignment:
Q  171 tatgctgttttactcctgtataaattataggatttg 206  Q
    |||| |||||||||||||||||||||||||||||||    
T  30013045 tatgttgttttactcctgtataaattataggatttg 30013080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 23219081 - 23218952
Alignment:
Q  3 gaggaggagcagagagcaaaatgtatttactgtcccaaggagataaggtttgacggtggaacgagttcaatgagaagtcattggttgaaacaccaagagg 102  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  23219081 gaggaggaaaagagagcaaaatgtatttactgtcccaaggagataaagtttaacggtggaacgagttcaatgagaaatcattggttgaaacaccaagagg 23218982  T
Q  103 aagataggaacaagaagcagaaatcgggtt 132  Q
    ||||||||||||||||||||||||||||||    
T  23218981 aagataggaacaagaagcagaaatcgggtt 23218952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 38824690 - 38824819
Alignment:
Q  3 gaggaggagcagagagcaaaatgtatttactgtcccaaggagataaggtttgacggtggaacgagttcaatgagaagtcattggttgaaacaccaagagg 102  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  38824690 gaggaggaaaagagagcaaaatgtctttactgtcccaaggagataaagtttaacggtggaacgagttcaatgagaaatcattggttgaaacaccaagagg 38824789  T
Q  103 aagataggaacaagaagcagaaatcgggtt 132  Q
    ||||||| ||||||||||||||||||||||    
T  38824790 aagatagtaacaagaagcagaaatcgggtt 38824819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 38827431 - 38827473
Alignment:
Q  164 tgcttgctatgctgttttactcctgtataaattataggatttg 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  38827431 tgcttgctatgttgttttactcctgtataaattataggatttg 38827473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 28750342 - 28750267
Alignment:
Q  202 atttgacactgccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttctt 277  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28750342 atttgacagtgccaatgacgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttctt 28750267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 51122698 - 51122785
Alignment:
Q  202 atttgacactgccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttcttagtggatgattg 289  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||||||    
T  51122698 atttgacactgtcaatgatgttaagagtcttgatttaggatggatgattgcatttttatttgttgttagctttcttggaggatgattg 51122785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 28740559 - 28740495
Alignment:
Q  213 ccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttctt 277  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28740559 ccaatgatgttaagattcttggtttaggatggatgattgcatttctatttgttgttagctttctt 28740495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 51122226 - 51122281
Alignment:
Q  151 tatgccttgtctttgcttgctatgctgttttactcctgtataaattataggatttg 206  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  51122226 tatgccttgtctttgcttgctatgttgctttactcctgtataaattataagatttg 51122281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 39942408 - 39942477
Alignment:
Q  208 cactgccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgttagctttctt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39942408 cactgccaatgatgttaagagtcttggtttaggatggatgattgcatttctatttgttgtcagctttctt 39942477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 39016448 - 39016391
Alignment:
Q  151 tatgccttgtctttgcttgctatgc--tgttttactcctgtataaattataggatttg 206  Q
    ||||||||||||||||||||||| |  | |||||||||||||||||||||||||||||    
T  39016448 tatgccttgtctttgcttgctatacactattttactcctgtataaattataggatttg 39016391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University