View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_high_29 (Length: 237)
Name: NF18945_high_29
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_high_29 |
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| [»] scaffold0186 (1 HSPs) |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 10183083 - 10182872
Alignment:
| Q |
19 |
aaatccccccgaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatccgctcttataagtacaatat |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
10183083 |
aaatccccccgaacaaactcgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccgtgactagctagcttatccgctcttacgagtacaatat |
10182984 |
T |
|
| Q |
119 |
gttcgaggcacttttcaaccacatggatactaaatttttgcatggagagtagtacatagttccctttgaactgagcagtaagttctgctatggcacttga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10182983 |
gttcgaggcacttttcaaccacatggatactaaatttttgcacggagagtagtacatagttccctttgaactgagcagttagttctgctatggcacttga |
10182884 |
T |
|
| Q |
219 |
ttctgcatctgt |
230 |
Q |
| |
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|||||||||||| |
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| T |
10182883 |
ttctgcatctgt |
10182872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 36471563 - 36471497
Alignment:
| Q |
30 |
aacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta |
96 |
Q |
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|||||||| | ||||||||||| |||| |||||||||||| |||||| ||| |||||||||| |||| |
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| T |
36471563 |
aacaaactcgagcataatgtccgaccatatcgtgtctgtaaccatgtgaccgtgactagctaactta |
36471497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 25778420 - 25778540
Alignment:
| Q |
111 |
tacaatatgttcgaggcacttttcaaccacatggatactaaatttttgcatggagagtagtacatagttccctttgaactgagcagtaagttctgctatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
25778420 |
tacaatatgttcgaggcacttttcaaccacatggatactaaatttttgcatggagagttgtacatatttcccattgaactgagcagtaagttctgctatg |
25778519 |
T |
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| Q |
211 |
gcactt-gattctgcatctgt |
230 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
25778520 |
gcacttggattctgcatctgt |
25778540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 26383755 - 26383676
Alignment:
| Q |
123 |
gaggcacttttcaaccacatggatactaaatttttgcatggagagtagtacatagttccctttgaactgagcagtaagtt |
202 |
Q |
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|||||||||||| ||||||||| | ||||||||||| | ||||| | ||||||||||||||||||||| | |||||||| |
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| T |
26383755 |
gaggcacttttcgaccacatggctgctaaatttttgtgtagagaggattacatagttccctttgaactgtggagtaagtt |
26383676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 49087499 - 49087421
Alignment:
| Q |
19 |
aaatccccccgaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttat |
97 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||| ||| |||| |||||| ||| ||||||||||| |||| |
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| T |
49087499 |
aaatccccctgaacaaactcgggcataatgtcccaccaaatcatgtttgtaaccatgtgaccgtgactagctagtttat |
49087421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 23928658 - 23928586
Alignment:
| Q |
24 |
cccccgaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta |
96 |
Q |
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|
|||||||||||||| ||||||| |||||||||| || |||| |||| |||||| ||| ||||||||||||||| |
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| T |
23928658 |
cccccgaacaaactcgggcatattgtcccaccatattgtgtttgtaaccatgtgaccgtgactagctagctta |
23928586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 49087136 - 49087082
Alignment:
| Q |
43 |
ataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttat |
97 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| ||| |||||||||||||||| |
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| T |
49087136 |
ataatgtcccaccaaatcgtgtttgtaaccatgtgaccgtgactagctagcttat |
49087082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 14783976 - 14783906
Alignment:
| Q |
19 |
aaatccccccgaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagcta |
91 |
Q |
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|||||||||||||||| || |||| ||||||||||||| |||||||||||| ||||| |||||||||||||| |
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| T |
14783976 |
aaatccccccgaacaa-ctcgggcgtaatgtcccaccatatcgtgtctgta-acatgtgaccatgactagcta |
14783906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 4609554 - 4609625
Alignment:
| Q |
23 |
ccccccgaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagct |
94 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || |||| |||| |||||| ||| ||||||||||||| |
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| T |
4609554 |
ccccccgaacaaactcgggcataatgtcccaccatattgtgtttgtaaccatgtgaccgtgactagctagct |
4609625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 23647147 - 23647093
Alignment:
| Q |
42 |
cataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta |
96 |
Q |
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||||||||||||||| || ||||||||| |||||| ||| ||||||||||||||| |
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| T |
23647147 |
cataatgtcccaccatattgtgtctgtaaccatgtgaccgtgactagctagctta |
23647093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 16735 - 16654
Alignment:
| Q |
17 |
aaaaatccccccgaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatc |
98 |
Q |
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|
||||||||||||||||||||| ||||||| |||||||||||| |||| ||||||| ||| |||||||| ||| || ||||| |
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| T |
16735 |
aaaaatccccccgaacaaactcgggcatagtgtcccaccaaactgtgtatgtagccctgtgaccatgacaagcaagtttatc |
16654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 16592388 - 16592455
Alignment:
| Q |
29 |
gaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagctta |
96 |
Q |
| |
|
||||||||| || |||||||||||| || || ||||||||| |||||| || ||||||||||||||| |
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| T |
16592388 |
gaacaaactcggacataatgtcccaacatattgtgtctgtaaccatgtgactgtgactagctagctta |
16592455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 22269 - 22338
Alignment:
| Q |
29 |
gaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatc |
98 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||| | || ||| || ||||||||| || ||||| |
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|
| T |
22269 |
gaacaaactcgggcacaatgtcccaccaaaccgtgtctgcaaccgtgtgactatgactagcaagtttatc |
22338 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 20718432 - 20718501
Alignment:
| Q |
29 |
gaacaaacttgggcataatgtcccaccaaatcgtgtctgtagccatgtaaccatgactagctagcttatc |
98 |
Q |
| |
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||||||||| ||||| |||||||||||||| |||||||| | || ||| || ||||||||| || ||||| |
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| T |
20718432 |
gaacaaactcgggcacaatgtcccaccaaaccgtgtctgcaaccgtgtgactatgactagcaagtttatc |
20718501 |
T |
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