View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_10 (Length: 451)
Name: NF18945_low_10
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Complemental strand, 16195358 - 16194936
Alignment:
| Q |
12 |
tcatcagaaagttcagcaaaaagtgaactaaatctcaatagataaggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagca |
111 |
Q |
| |
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||||||| || ||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
16195358 |
tcatcagcaatttcagcaaaaagtgaactaaaccttaataaataaggttccctacaagttgttccttcagggcacacaactaaatcaccttccctaagca |
16195259 |
T |
|
| Q |
112 |
gcctttgcattgtttccctatcttgttctctgtctcttgtcaaactcattgtcctaataggagcgaagaattccgacactttgcttatgctgtaagtcac |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16195258 |
acctttgcattgtttccctatcttgttctctgtctcttgtcaaactcattgtccgaataggagcgaagaattccgacactttgcttatgctgtaagtcac |
16195159 |
T |
|
| Q |
212 |
acaactcaaaggttttctcagactcatgctaagaaaaacaggatctaacaaagtcctatgtgtacaaacatagagttcccctttacttggttctaaatat |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16195158 |
acaactcaaaggttttctcagactcatgctaagaaaaacaggatctaacaaagtcctatgtgtacaaacatagagttcccctttacttggttctaaatat |
16195059 |
T |
|
| Q |
312 |
ctttgagggttactaaagcctttgacattcagaactataccactaaatgttattaatgaaagggtccatttgtaatgaaagttcaacacaagaaaaattc |
411 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
16195058 |
ctttgagggttactaaagcctttgacattaagaactataccattaaatgttattaatgatagtgtccatttgtaatgaaagttcaacacaagaaaaattc |
16194959 |
T |
|
| Q |
412 |
tataagtagataacagaactccc |
434 |
Q |
| |
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|||| ||||||||||||| |||| |
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| T |
16194958 |
tatatgtagataacagaattccc |
16194936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 16147577 - 16147852
Alignment:
| Q |
12 |
tcatcagaaagttcagcaaaaagtgaactaaatctcaatagataaggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagca |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||| || |
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| T |
16147577 |
tcatcagcaagttcagcaaaaagtgaactaaaccttaataaataaggttccctacaagttgttccttcaggacaaacaactaaatcaccttcacttaaca |
16147676 |
T |
|
| Q |
112 |
gcctttgcattgtttccctatcttgttctctgtctcttgtcaaactcattgtcctaataggagcgaagaattccgacactttgcttatgctgtaagtcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |||||||| ||| |||| |||| | || |||||||||||||||| ||| ||||| || |
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| T |
16147677 |
acctttgcattgtttccctatcttgttctctatcccttgttaaactcatcgtcttaatcggagacatgatctccgacactttgcttaagctataagttac |
16147776 |
T |
|
| Q |
212 |
acaactcaaaggttttctcagactcatgctaagaaaaacaggatctaacaaagtcctatgtgtacaaacatagagt |
287 |
Q |
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| ||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
16147777 |
cgttgttaaaggttttctcaaactcatgctaagaaaaacaggatctaataatgtcctatgtgtacaaacatagagt |
16147852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 39975811 - 39975938
Alignment:
| Q |
24 |
tcagcaaaaagtgaactaaatctcaatagataaggctccctacaagttgttccttcaggacacacaaccaaatcaccttcccttagcagcctttgcattg |
123 |
Q |
| |
|
|||||||| | ||||||||| || || | ||| || || ||||| ||||||||||||||||| ||||| ||||||||||| ||||| | | ||||||||| |
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| T |
39975811 |
tcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggacaaacaactaaatcaccttctcttagtaacttttgcattg |
39975910 |
T |
|
| Q |
124 |
tttccctatcttgttctctgtctcttgt |
151 |
Q |
| |
|
|||| | |||||||| |||||||||||| |
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|
| T |
39975911 |
tttcaccatcttgttttctgtctcttgt |
39975938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 4470494 - 4470552
Alignment:
| Q |
27 |
gcaaaaagtgaactaaatctcaatagataaggctccctacaagttgttccttcaggaca |
85 |
Q |
| |
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|||||||| | |||||| ||||||||| | |||||||||||||| |||||||| ||||| |
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|
| T |
4470494 |
gcaaaaagagcactaaacctcaatagaaatggctccctacaagtcgttccttccggaca |
4470552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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