View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_15 (Length: 382)
Name: NF18945_low_15
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 64 - 364
Target Start/End: Original strand, 36395677 - 36395977
Alignment:
| Q |
64 |
ttaccgattctaagagattcatgaggatgtttgaagagaaacataagaagacgaatagtccttaaattaaagctatgaaaagaagaagaaagagcttgtt |
163 |
Q |
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| T |
36395677 |
ttaccaattctaagtgattcatgaggatgtttgaagagaaacataagaagacgaatagtccttaaattaaagctatgaaaagaagaagaaagagcttgtt |
36395776 |
T |
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| Q |
164 |
gcaattctctatcatcaatgaaaccacttcgatctctatccaccatttgaaagcttcttataacatcttggtttgttccaggtggaaaatttgaataccc |
263 |
Q |
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| T |
36395777 |
gcaattctctatcatcaatgaaaccacttcgatctctatctaccatttgaaagcttcttataacatcttggtttgttccaggtggaaaatttgaataccc |
36395876 |
T |
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| Q |
264 |
agatgaagaagaaggaggatacccagatgaagatggagggtacccagatgaagaaacttgtgagggagggtaattatgagggtggttgtagtttgaagaa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36395877 |
agatgaagaagaaggaggatacccagatgaagatggagggtacccagatgaagaaacttgtgagggagggtaattatgagggtggttgtagtttgaagaa |
36395976 |
T |
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| Q |
364 |
g |
364 |
Q |
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| T |
36395977 |
g |
36395977 |
T |
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