View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18945_low_16 (Length: 338)
Name: NF18945_low_16
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 44 - 320
Target Start/End: Original strand, 2698540 - 2698821
Alignment:
| Q |
44 |
aagacaccgccctttcaagcattacaatccaaagcacaacctcaaactgtcaaatgattcatatctatatcaactgtacatcaacgatggtgacgatatt |
143 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||||| |
|
|
| T |
2698540 |
aagacaccgtcctttcaagcattacagtccaaagcaaaacctcaaactgtcaaatgattcatacctatatcaactatacatcaatgacggtgacgatatc |
2698639 |
T |
|
| Q |
144 |
gatcaaccattttaaaagaaatagcatcacgtcacaaacctagacaatttgaacagaggttttgagaattaagtgccgatattagtaatggtgtt----a |
239 |
Q |
| |
|
||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
2698640 |
gatcaactattttaaacgaaatagtatcacgtcacaaacctagacaatttgaacggaagttttgagaatttagtgtcgatattagtaatggtgttattaa |
2698739 |
T |
|
| Q |
240 |
ttaatgaatataat-attcaattcatttatgttactaatcatccattttgataaatctgaataatttacttatcatatttct |
320 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2698740 |
ttaatggatataatgattcaattcatttatgttaccaaatatccattttgacaaatctgaataatttacttatcatatttct |
2698821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2698454 - 2698499
Alignment:
| Q |
1 |
gcacacgtacccaccatttactatgacaaaaacactcacacataag |
46 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2698454 |
gcacacgtacccaccatttactatgacgaaaacacccacacataag |
2698499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University