View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_2 (Length: 572)
Name: NF18945_low_2
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 23 - 558
Target Start/End: Complemental strand, 6534303 - 6533765
Alignment:
| Q |
23 |
agcatggcttcctctactctttcaactcct---cctaatctcctcaaacaccaaaacagaccctcttccaccacctcatcacgacgttcctccacctttc |
119 |
Q |
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| T |
6534303 |
agcatggcttcctctactctttcaactccttctcctaatctcctcaaacaccaaaacagaccctcttccaccacctcatcacgacgttcctccacctttc |
6534204 |
T |
|
| Q |
120 |
ttccacctataagatcctcagtttcagaaataccacccttccaagtctccatctctcaaccacaaacaaccaaacttccgatccgtaaaatccctggtga |
219 |
Q |
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| T |
6534203 |
ttccacctataagatcctcagtttcagaaaaaccacccttccaagtctccatctctcaaccacaaacaaccaaacttccgatccgtaaaatccctggtga |
6534104 |
T |
|
| Q |
220 |
ctatggcatcccattcatccaaccttacaaagaccgtttagactatttctacaaccaaggtcgtgatgaatacttcaaatcacgtatccaaaaataccag |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6534103 |
ctatggcatcccattcatccaaccatacaaagaccgtttagactatttctacaaccaaggtcgtgatgaatacttcaaatcacgtatccaaaaataccag |
6534004 |
T |
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| Q |
320 |
tcaactatcttccgcactaacgttcctcctggtcctttcatagctcaaaaccctaacgttgttgtcctccttgatggcaaaagcttccccgtcctctttg |
419 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6534003 |
tcaactatcttccgcactaacgttccacctggtcctttcatagctcaaaaccctaacgttgttgtcctccttgatggcaaaagcttccccgtcctcttcg |
6533904 |
T |
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| Q |
420 |
acgcatcgaagatcgataaaaccgatgtcttcacaggtacatacacaccttctacagaactcactggtggttatagagttttatcttaccttgatccttc |
519 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6533903 |
acgcatcgaagatcgataaaaccgatgtattcacaggtacatacacaccttctacagaactcactggtggttatagagttttatcttaccttgatccttc |
6533804 |
T |
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| Q |
520 |
tgaaccaaaacatgaacagctcaagaagttgatgttttt |
558 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
6533803 |
tgaaccaaaacatgaacagctcaagaagttgatgttttt |
6533765 |
T |
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