View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_21 (Length: 302)
Name: NF18945_low_21
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 6309854 - 6310129
Alignment:
| Q |
14 |
tactcctaacatatataagacagtttttctta-gttgttgaaaattgaaagaaacacctaaatagccgtagggcacatctcataacactttttctccatc |
112 |
Q |
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| T |
6309854 |
tactcctaacatatataagacattttttcttaagttgttgaaaattgaaagaaacacctaaatagccgtagggcacatctcataacactttttcgccatc |
6309953 |
T |
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| Q |
113 |
tcgaggtctgccttgacaactccgaccattccatctccaataggatatttcattgtgaggtgtaacgttgagatcaccgctcccaaatcagcaacagcag |
212 |
Q |
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| T |
6309954 |
tcgaggtctgccttgacaagtccgaccattccatctccaataggatatttcattgtgaggtgtaacgttgagatcaccgctcccaaatcagcaacagcag |
6310053 |
T |
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| Q |
213 |
gcaagccaataacaacattataaacagaccaagaatc----aatgacaaagtaccttaccttaatcatcttcacat |
284 |
Q |
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| T |
6310054 |
gcaagccaataacaacattataaacagaccaagaatcaattaatgacaaagtaccttaccttaatcatcttcacat |
6310129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 6323564 - 6323754
Alignment:
| Q |
51 |
tgaaaattgaaagaaacacctaaat-----agccgtagggcacatctcataacactttttctccatctcgaggtctgccttgacaactccgaccattcca |
145 |
Q |
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| T |
6323564 |
tgaaaatcgaaagaaacacctaaattaaaaagccatggggcacatatcctaacaatttttggccatatccaagtctgccttgacaactccgaccattcca |
6323663 |
T |
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| Q |
146 |
tctccaataggatatttcattgtgaggtgtaacgttgagatcaccgctcccaaatcagcaacagcaggcaagccaataacaacattataaa |
236 |
Q |
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| T |
6323664 |
tctccggcaggatatttcatggtgaggtgtagggttgagatcacatctctcaaatcagcaactgtcagcctgccaataacaacattataaa |
6323754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 6326962 - 6327015
Alignment:
| Q |
108 |
ccatctcgaggtctgccttgacaactccgaccattccatctccaataggatatt |
161 |
Q |
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| T |
6326962 |
ccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
6327015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 6329939 - 6330015
Alignment:
| Q |
95 |
taacactttttctccatctcgaggtctgccttgacaactccgaccattccatctccaataggatatttcattgtgag |
171 |
Q |
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| T |
6329939 |
taacacttcttagccatctcaagatctgccctaacaactccaacctttccatctccaagaggatatttcatggtgag |
6330015 |
T |
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