View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_27 (Length: 252)
Name: NF18945_low_27
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 52 - 244
Target Start/End: Complemental strand, 29732897 - 29732706
Alignment:
| Q |
52 |
ttcttccgtaaaaacaaaaacaaatcctgtttataaataaagcagcctatcctctctgcttaaagcacaacatttcatagttagtttactttttacgttt |
151 |
Q |
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| T |
29732897 |
ttcttccataaaaacaaaaacaaatcctgtttataaataaagcagcctatcctct-tgcttaaagcataacatttcatagttagtttactttttacgttt |
29732799 |
T |
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| Q |
152 |
agcaaattagataagaaaaccatgttgtcgttaagtccccctattacactaataacttgtccaccaaagactacaaccaaccctacctatgct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29732798 |
agcaaattagataagaaaaccatgttgtcgttaagtccccctattacactaataacttgtccaccaaagactacaaccaaccctacccatgct |
29732706 |
T |
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