View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_28 (Length: 247)
Name: NF18945_low_28
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 44011291 - 44011533
Alignment:
| Q |
1 |
taaaccgcgtgacaaattataattggggaacaacacggatagtatccattgagtaggacctaagttttgtattatttttaagtatgtaacatgtaatatg |
100 |
Q |
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| T |
44011291 |
taaaccgcgtgacaaattataattggggaacaacacggatagtatccattgagtaggacctaagttttgtattatttttaagtatgtaacatgtaatatg |
44011390 |
T |
|
| Q |
101 |
tgacagaaaagtgtagcaagttttgattctgcttactgtgagagataggattcctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattg |
200 |
Q |
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| T |
44011391 |
tgacagaaaagtgtagcaagttttgattctgcttactgtgagagataggattcctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattg |
44011490 |
T |
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| Q |
201 |
aagtataacaggtttactgatggtggattaactccctttgcta |
243 |
Q |
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| T |
44011491 |
aagtataacaggtttactgatggtggattaactccctttgcta |
44011533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 3175862 - 3175753
Alignment:
| Q |
131 |
gcttactgtgagagataggattcctgtgacaatgcctgttttgatagcaagagccaagtaaggaccattgaagtataacaggtttactgatggtggatta |
230 |
Q |
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|||||| |||||||| | |||||| ||||||| || |||||||||||||||||||| | |||||| |||||||||||| |||| ||||||||||||| |
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| T |
3175862 |
gcttacagtgagagacaagattccagtgacaagtccagttttgatagcaagagccaaatgtggaccactgaagtataacatgtttgatgatggtggatta |
3175763 |
T |
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| Q |
231 |
actccctttg |
240 |
Q |
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| T |
3175762 |
agtccctttg |
3175753 |
T |
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