View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_3 (Length: 562)
Name: NF18945_low_3
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 19190481 - 19190923
Alignment:
| Q |
16 |
atatggtgatggagggcgtacgagtattggtggatatggcgaagaaaaccgttctagtggtggctatggatatggagggcgttctagtggttacggtaat |
115 |
Q |
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| T |
19190481 |
atatggtgatggagggcgttcgagtattggtggatatggcgaagaaaaccgttctagtggtggctatggatatggagggcgttctagtggttacggtaat |
19190580 |
T |
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| Q |
116 |
gagcaaagttttggagggtatggtagggatggtcgtgatagtcgcttcagtggtggatatggctatgttaattaattaggttagaaattatatggttcaa |
215 |
Q |
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| T |
19190581 |
gagcaaagttttggagggtatggtagggatggtcgtgatagtcgcttcagtggtggatatggctatgttaattaattaggttagaaattatatggttcaa |
19190680 |
T |
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| Q |
216 |
gggttttgatgaaactactgatttcagttttcactgaattataaacagttataaattatgaattaaataa-gggcatagtctataagtacttatatctaa |
314 |
Q |
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| T |
19190681 |
gggttttggtgacagtactgattttagttttcactgaat--taaacagttataaattatgaattaaataaggggcata---tataagtacttatatctaa |
19190775 |
T |
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| Q |
315 |
actttgcacttttctcttatcttttctttagctttagtagtttgattagttacttggtctgtagtaatgtattcctatatggaaatatcta--tgcattt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
19190776 |
actttgcacttttctcttatcttttctttagctttagtagtttgattagttacttggtctgtagtaatgtattcctatatggaaatatctatctgtattt |
19190875 |
T |
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| Q |
413 |
gcctttagctaaataataaaagttagtattgatattttaattgtgagat |
461 |
Q |
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| T |
19190876 |
gcctttagttaaataataaaagtt-gtattgatattttaattgtgagat |
19190923 |
T |
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