View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18945_low_32 (Length: 236)
Name: NF18945_low_32
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18252951 - 18252731
Alignment:
| Q |
1 |
aagtggaataacaccaccgacagctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcg |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18252951 |
aagtggaataacaccaccaacggctatatctaaacgagcaatggaaattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcg |
18252852 |
T |
|
| Q |
101 |
gctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18252851 |
gctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccg |
18252752 |
T |
|
| Q |
201 |
ggccatttggtgcattgtaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18252751 |
ggccatttggtgcattgtaat |
18252731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18256617 - 18256837
Alignment:
| Q |
1 |
aagtggaataacaccaccgacagctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcg |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18256617 |
aagtggaataacaccacctacggctatatctaaacgtgcaatggatattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcg |
18256716 |
T |
|
| Q |
101 |
gctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18256717 |
gctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccg |
18256816 |
T |
|
| Q |
201 |
ggccatttggtgcattgtaat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
18256817 |
ggccatttggtgcattgtaat |
18256837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 18245847 - 18245627
Alignment:
| Q |
1 |
aagtggaataacaccaccgacagctatatctaaacgcgcaatggagattccaagaccgtttacaccgggaaattgttcgtctattgcagtggtaacagcg |
100 |
Q |
| |
|
|||||||||||| ||||| | |||| |||||||||||||| ||| |||||||||||||||| ||| | |||||| |||| | ||||| ||| ||||| |
|
|
| T |
18245847 |
aagtggaataactccacctgcggctaaatctaaacgcgcaagggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagct |
18245748 |
T |
|
| Q |
101 |
gctttgataatgtttgtggtgtttccagctgcggctaggccgtggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccg |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
18245747 |
gctttgataatgtttgaggtgtttccggctgcagctaggccgtggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcgg |
18245648 |
T |
|
| Q |
201 |
ggccatttggtgcattgtaat |
221 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
18245647 |
ggccatttggtaaattgtaat |
18245627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University