View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_33 (Length: 235)
Name: NF18945_low_33
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44011224 - 44011004
Alignment:
| Q |
1 |
tgaattgtaattagataacagtaaaaacagtgcacaaagaactgatctagattttgtacttaaatatagcatgatgttgttttacttaactgcgactcat |
100 |
Q |
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| T |
44011224 |
tgaattgtaattagataacagtaaaaacagtgcacaaagaactgatctagattttgtacttaaatatagcatgatgttgttttacttaactgcgactcat |
44011125 |
T |
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| Q |
101 |
attccacaaaatttaccaatgtttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatgg |
200 |
Q |
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| T |
44011124 |
attccacaacatttaccaatgtttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatgg |
44011025 |
T |
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| Q |
201 |
ctattggtattatgaacatag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44011024 |
ctattggtattatgaacatag |
44011004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 3176309 - 3176408
Alignment:
| Q |
122 |
tttcaggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattggtattatgaacatag |
221 |
Q |
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| T |
3176309 |
tttcaggaaggaattgcagttggaagaacatttgcttcacttcagaactaccaagtggatggaaacaaagaaatgatggctattggtcttatgaacatag |
3176408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 32958145 - 32958227
Alignment:
| Q |
125 |
caggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattgg |
207 |
Q |
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| T |
32958145 |
caggaaggtattgcagtaggaaggacatttgcagctcttggaaactataaagtggatggaaataaggaaatgatggcaattgg |
32958227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 32967558 - 32967640
Alignment:
| Q |
125 |
caggaaggaattgcagtaggtagaacatttgcagcacttaagaattaccaagtggatggaaacaaagaaatgatggctattgg |
207 |
Q |
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||||||||||||||||| || |||||||||||||| | | || ||| |||| |||||||| || ||||||||||| ||||| |
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| T |
32967558 |
caggaaggaattgcagttgggagaacatttgcagctataagaaactacaaagttgatggaaataaggaaatgatggcaattgg |
32967640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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