View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18945_low_4 (Length: 531)
Name: NF18945_low_4
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 329776 - 330272
Alignment:
| Q |
17 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
116 |
Q |
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| T |
329776 |
cacagaaaagaaacatgaaacaattttcattgagctcaatgcttaaacacacttcaatcctattagtgcagagtaaagtcttcttagaagcaggcatcta |
329875 |
T |
|
| Q |
117 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtagtgaaaaatatacatacaattcgaagcagcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
329876 |
ataggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtggtgaaaaatatatatacaattcgaagcagcaa |
329975 |
T |
|
| Q |
217 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacatgaag-nnnnnnnaccaatagattgcaagtctctgtattttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
329976 |
acatacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacataaagttttttttaccaatagattgcaagtctctgtatttta |
330075 |
T |
|
| Q |
316 |
ctattttacataaaatattaagaattaccaacaatggaatgtgcaaaatttcaatttgataggagaaattgttctatttgtaactgtatgcatctataaa |
415 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
330076 |
ctattttacataaaatattaagaattaccagtaatggaatgtgcaaaatttcaatttgatgggagaaattgttctatttgtaactgtatgcatctataaa |
330175 |
T |
|
| Q |
416 |
cacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgt |
512 |
Q |
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| T |
330176 |
cacatttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgt |
330272 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 48030662 - 48030582
Alignment:
| Q |
82 |
gtgcagagtaaagtcttcttagaagcaggcatctaataggcagcaacagcagagagcagcacaactgcaccaatatacaaa |
162 |
Q |
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||||| ||||| ||||||| | ||||| ||||| || || |||||||||||||||||||| | ||||| |||| |||||| |
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| T |
48030662 |
gtgcaaagtaatgtcttctcaaaagcatgcatccaagagacagcaacagcagagagcagccaagctgcaacaatttacaaa |
48030582 |
T |
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