View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18945_low_6 (Length: 459)
Name: NF18945_low_6
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 28 - 424
Target Start/End: Complemental strand, 35202572 - 35202176
Alignment:
| Q |
28 |
agaaggagggtttgaattagcactagtaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaggagtgatttggtcgtttaagacgt |
127 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35202572 |
agaaggagggtttgaattagcactattaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaagagtgatttggtcgtttaagacgt |
35202473 |
T |
|
| Q |
128 |
ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35202472 |
ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata |
35202373 |
T |
|
| Q |
228 |
aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctgttgaagaagctcttgacctggttt |
327 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35202372 |
aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctgttgaagaagctcttgacctggttt |
35202273 |
T |
|
| Q |
328 |
ttccataaccctatttccaccaccacttgaagaagccattgaaaccttatgatcatctatctcagcctacaataggataagaaaaacaaattagata |
424 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
35202272 |
ttccataaccctatttccaccaccacttgaagaagccattgaaaccttaagatcatctatctcagcctacaataggataagaaaaaaaaattagata |
35202176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 22483403 - 22483518
Alignment:
| Q |
146 |
ccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagt |
245 |
Q |
| |
|
|||||||||||||| || || ||||| |||||| | ||||||||||| |||| | |||||||| | |||||||||||| | ||| || || || |||| |
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| T |
22483403 |
ccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaattgttgtagt |
22483502 |
T |
|
| Q |
246 |
aacagaatttagtgtt |
261 |
Q |
| |
|
|||| ||||| ||||| |
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|
| T |
22483503 |
aacaaaatttggtgtt |
22483518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 128 - 303
Target Start/End: Original strand, 3945850 - 3946025
Alignment:
| Q |
128 |
ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata |
227 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| | ||| || ||||| ||||| |||||||||||||| | |
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|
| T |
3945850 |
ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca |
3945949 |
T |
|
| Q |
228 |
aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttgttgttgctg |
303 |
Q |
| |
|
|||| ||||| || |||||||| || || ||||||||||| ||||||||||||||| | | ||||||||||||||| |
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|
| T |
3945950 |
aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacacttgagagcttgttgttgctg |
3946025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 261
Target Start/End: Complemental strand, 39741199 - 39741065
Alignment:
| Q |
127 |
tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat |
226 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || || | |||||||||| | |||||||| ||| | || | ||||||||| | |||||| || | |
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|
| T |
39741199 |
tttgttttttctgcatccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagta |
39741100 |
T |
|
| Q |
227 |
aaactatagttattatagtaacagaatttagtgtt |
261 |
Q |
| |
|
| ||| ||||| || || ||||||||||| ||||| |
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|
| T |
39741099 |
agactgtagttgttgtaataacagaatttggtgtt |
39741065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 24878995 - 24878842
Alignment:
| Q |
129 |
tgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataa |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| || | ||||||| |||||||||| ||| | || ||||||| || | ||||||||| | ||| |
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|
| T |
24878995 |
tgttttttctgcagccaccaccaacaggaacatttctgagggatccaccttttgtccaataccttctgcatcctttgcaaaaatatcttggttgagttaa |
24878896 |
T |
|
| Q |
229 |
actatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca |
282 |
Q |
| |
|
|| |||||||| ||||| |||||||| |||||||| ||| |||| | |||||| |
|
|
| T |
24878895 |
gctgtagttattgtagtagcagaattttgtgtttgaagaaccacatcttggaca |
24878842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 34646131 - 34645998
Alignment:
| Q |
128 |
ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata |
227 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| | ||||||| |||||||| ||| |||| | ||||||||| | ||||||||||| | |
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|
| T |
34646131 |
ttgttttttcttgaaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaaatatcttggttgtgtca |
34646032 |
T |
|
| Q |
228 |
aactatagttattatagtaacagaatttagtgtt |
261 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |
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|
| T |
34646031 |
aactatagttgttgtagtaacaaaattttgtgtt |
34645998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 283
Target Start/End: Complemental strand, 13481126 - 13481015
Alignment:
| Q |
172 |
tccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagtaacagaatttagtgtttgatgaatca |
271 |
Q |
| |
|
||||||| |||||||||||||| |||| | ||||||||| ||||||||||||| ||| |||||||| || ||||| |||||||| ||||| | ||| ||| |
|
|
| T |
13481126 |
tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgagtca |
13481027 |
T |
|
| Q |
272 |
caacgtggacac |
283 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
13481026 |
catcttggacac |
13481015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 294
Target Start/End: Complemental strand, 41895942 - 41895775
Alignment:
| Q |
127 |
tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat |
226 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||| | | |||||| |||||||| ||| |||||| |||||| |||| ||||||||||| |
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|
| T |
41895942 |
tttgttttttcttgaaccaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgag |
41895843 |
T |
|
| Q |
227 |
aaactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacaccttaaagcttg |
294 |
Q |
| |
|
| ||||||||||| |||||||||||||| ||||| | ||||| || | |||||| |||||||||| |
|
|
| T |
41895842 |
aggctatagttattgtagtaacagaattttgtgttagttgaattgcaccttggacagtttaaagcttg |
41895775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 34976123 - 34976278
Alignment:
| Q |
127 |
tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat |
226 |
Q |
| |
|
|||||||||||| || || ||||||||||| | ||| ||||||||||| ||| | |||||||| ||| |||| | |||||||||| ||||| || || |
|
|
| T |
34976123 |
tttgttttttctacagcctccaccaacagggatgttcctaagtgttcctcctttggtccaataccttctacaagtcttgcagaagtaccttggctgagag |
34976222 |
T |
|
| Q |
227 |
aaactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca |
282 |
Q |
| |
|
| ||| || || || ||||| |||||||| |||| | ||||||||| | |||||| |
|
|
| T |
34976223 |
agactgtaattgttgtagtagcagaatttggtgtgagttgaatcacaccttggaca |
34976278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 282
Target Start/End: Complemental strand, 28437458 - 28437310
Alignment:
| Q |
134 |
tttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactat |
233 |
Q |
| |
|
||||| ||||||||||||| |||||||| | | | |||||| |||||||||||||| | || | ||||||||| ||||||||||| | | ||| | |
|
|
| T |
28437458 |
tttctacaaccaccaccaatcggaacgttacgcaacgatccaccatttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgt |
28437359 |
T |
|
| Q |
234 |
agttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca |
282 |
Q |
| |
|
|||| || |||||||||||||| ||||||| |||||||| | |||||| |
|
|
| T |
28437358 |
agttgttgtagtaacagaattttgtgtttggagaatcacatcttggaca |
28437310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 5211208 - 5211317
Alignment:
| Q |
173 |
ccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagtaacagaatttagtgtttgatgaatcac |
272 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| || || | ||||||||| | | | ||||| || ||||| |||||||| ||||| ||| |||| |
|
|
| T |
5211208 |
ccaccttttgtccaatatcttttacagtttttgcaaaaatggcgtggttgtgagagattgtagttgttgtagtagcagaattttgtgttgtttgattcac |
5211307 |
T |
|
| Q |
273 |
aacgtggaca |
282 |
Q |
| |
|
|||||||||| |
|
|
| T |
5211308 |
aacgtggaca |
5211317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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