View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18945_low_8 (Length: 456)
Name: NF18945_low_8
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 138 - 438
Target Start/End: Original strand, 36883000 - 36883300
Alignment:
| Q |
138 |
atataaaagtttgagtattgtgcattactcaaattttatctcttccattgaaaatatttaaatatatatgttggttcatttgcnnnnnnnnnnnnacctt |
237 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| |
|
|
| T |
36883000 |
atataaaagtttgagtattgtgcactactcaaattttatctcttccaatgaaaatgtttgaatatatatgttggttcatttgctttttcttttttacctt |
36883099 |
T |
|
| Q |
238 |
ggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacgaaaat |
337 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36883100 |
ggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaaat |
36883199 |
T |
|
| Q |
338 |
cttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttccttcgccacagcaagccaag |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36883200 |
cttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagccaag |
36883299 |
T |
|
| Q |
438 |
t |
438 |
Q |
| |
|
| |
|
|
| T |
36883300 |
t |
36883300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 236 - 433
Target Start/End: Original strand, 36893101 - 36893298
Alignment:
| Q |
236 |
ttggagcagtatatcaaaagtcttgtaccacaacacttctactttagaagcaacaacaagggaaaaacatcaagtgaaattttcaagacaacacacgaaa |
335 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||| || |||| ||||| || || ||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
36893101 |
ttggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaag |
36893200 |
T |
|
| Q |
336 |
atcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttccttcgccacagcaagc |
433 |
Q |
| |
|
||||||| |||| || ||| |||||||||||||| || ||||||||||| || ||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
36893201 |
gtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagc |
36893298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 36882914 - 36882957
Alignment:
| Q |
4 |
tgattttagaaacttccatgaagcaaaagttttactaaaatgtt |
47 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36882914 |
tgatttgagaaacttccatgaagcaaaagttttactaaaatgtt |
36882957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University